BioSankey: visualization of microbial communities over time
| Autor: | Klaus Rembart, Denise Rauer, Thomas Nussbaumer, Alexander Platzer, Julia Polzin, Ping Han |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
Web server Databases Factual Computer science microbiome computer.software_genre JavaScript 03 medical and health sciences 0302 clinical medicine Sankey diagram Web page Computer Graphics sankey ddc:610 Interactive visualization visualization computer.programming_language Gene Expression Html Microbiome Sankey Visualization Information retrieval Microbiota High-Throughput Nucleotide Sequencing General Medicine DUAL (cognitive architecture) 030104 developmental biology Metagenomics 030220 oncology & carcinogenesis gene expression html computer Genome Bacterial Software TP248.13-248.65 Research Article Biotechnology |
| Zdroj: | J. Integr. Bioinform. 15:20170063 (2018) Journal of Integrative Bioinformatics, Vol 15, Iss 4, Pp 385-86 (2018) Journal of Integrative Bioinformatics |
| Popis: | Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners. |
| Databáze: | OpenAIRE |
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