ASAP: analysis of peptide composition
| Autor: | Jaume Piñol, Marc A. Marti-Renom, Xavier Serra-Hartmann, Enrique Querol, Xavier Rebordosa |
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| Rok vydání: | 2000 |
| Předmět: |
Statistics and Probability
Databases Factual Sequence alignment Peptide Tripeptide Computational biology Biology Proteomics Biochemistry Web tool World Wide Web Sequence Analysis Protein natural sciences Molecular Biology chemistry.chemical_classification Internet Sequence database Computational Biology Proteins A protein Protein engineering Computer Science Applications Computational Mathematics ComputingMethodologies_PATTERNRECOGNITION Computational Theory and Mathematics chemistry Oligopeptides Sequence Alignment Software |
| Zdroj: | Scopus-Elsevier |
| ISSN: | 1367-4811 1367-4803 |
| DOI: | 10.1093/bioinformatics/16.12.1153 |
| Popis: | Summary: ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies. Availability: http://guitar.rockefeller.edu/~marcius/ASAP.html Contact: martim@rockefeller.edu * To whom correspondence should be addressed. |
| Databáze: | OpenAIRE |
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