Intratumoral CD8+ T cells with a tissue-resident phenotype mediate local immunity and immune checkpoint responses in breast cancer
| Autor: | Balaji Virassamy, Franco Caramia, Peter Savas, Sneha Sant, Jianan Wang, Susan N. Christo, Ann Byrne, Kylie Clarke, Emmaline Brown, Zhi Ling Teo, Bianca von Scheidt, David Freestone, Luke C Gandolfo, Karsten Weber, Julia Teply-Szymanski, Carsten Denkert, Sibylle Loibl, Olivia Lucas, Charles Swanton, Ran Li, Stephen J. Luen, Terence P. Speed, Phillip K. Darcy, Paul J Neeson, Laura K. Mackay and Sherene Loi |
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| Rok vydání: | 2022 |
| DOI: | 10.5281/zenodo.7325110 |
| Popis: | This data set belongs to the paper: "Intratumoral CD8+ T cells with a tissue-resident phenotype mediate local immunity and immune checkpoint responses in breast cancer". The scRNA-seq mouse data are available here. Raw scRNA-seq fastq files: SS_V_1_HGYKJDRXX_CATGAACA_L001_R1.fastq.gz SS_V_1_HGYKJDRXX_CATGAACA_L001_R2.fastq.gz SS_V_1_HGYKJDRXX_CATGAACA_L002_R1.fastq.gz SS_V_1_HGYKJDRXX_CATGAACA_L002_R2.fastq.gz SS_V_2_HGYKJDRXX_TCACTCGC_L001_R1.fastq.gz SS_V_2_HGYKJDRXX_TCACTCGC_L001_R2.fastq.gz SS_V_2_HGYKJDRXX_TCACTCGC_L002_R1.fastq.gz SS_V_2_HGYKJDRXX_TCACTCGC_L002_R2.fastq.gz SS_V_3_HGYKJDRXX_AGCTGGAT_L001_R1.fastq.gz SS_V_3_HGYKJDRXX_AGCTGGAT_L001_R2.fastq.gz SS_V_3_HGYKJDRXX_AGCTGGAT_L002_R1.fastq.gz SS_V_3_HGYKJDRXX_AGCTGGAT_L002_R2.fastq.gz SS_V_4_HGYKJDRXX_GTGACTTG_L001_R1.fastq.gz SS_V_4_HGYKJDRXX_GTGACTTG_L001_R2.fastq.gz SS_V_4_HGYKJDRXX_GTGACTTG_L002_R1.fastq.gz SS_V_4_HGYKJDRXX_GTGACTTG_L002_R2.fastq.gz Raw single cell VDJ sequencing files: SS_VDJ_V_1_HGYKJDRXX_GCGAGAGT_L001_R1.fastq.gz SS_VDJ_V_1_HGYKJDRXX_GCGAGAGT_L001_R2.fastq.gz SS_VDJ_V_1_HGYKJDRXX_GCGAGAGT_L002_R1.fastq.gz SS_VDJ_V_1_HGYKJDRXX_GCGAGAGT_L002_R2.fastq.gz SS_VDJ_V_2_HGYKJDRXX_TACGTTCA_L001_R1.fastq.gz SS_VDJ_V_2_HGYKJDRXX_TACGTTCA_L001_R2.fastq.gz SS_VDJ_V_2_HGYKJDRXX_TACGTTCA_L002_R1.fastq.gz SS_VDJ_V_2_HGYKJDRXX_TACGTTCA_L002_R2.fastq.gz SS_VDJ_V_3_HGYKJDRXX_AGTCCCAC_L001_R1.fastq.gz SS_VDJ_V_3_HGYKJDRXX_AGTCCCAC_L001_R2.fastq.gz SS_VDJ_V_3_HGYKJDRXX_AGTCCCAC_L002_R1.fastq.gz SS_VDJ_V_3_HGYKJDRXX_AGTCCCAC_L002_R2.fastq.gz SS_VDJ_V_4_HGYKJDRXX_CTATAGTG_L001_R1.fastq.gz SS_VDJ_V_4_HGYKJDRXX_CTATAGTG_L001_R2.fastq.gz SS_VDJ_V_4_HGYKJDRXX_CTATAGTG_L002_R1.fastq.gz SS_VDJ_V_4_HGYKJDRXX_CTATAGTG_L002_R2.fastq.gz Raw single cell hashing sequencing: SS-V_S4_R1_001.fastq.gz SS-V_S4_R2_001.fastq.gz Processed Seurat object: tils.obj.rdata Process VDJ sequencing data: all_contig_annotations.csv |
| Databáze: | OpenAIRE |
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