InterPro in 2011: new developments in the family and domain prediction database
Autor: | S. Hunter, P. Jones, A. Mitchell, R. Apweiler, T. K. Attwood, A. Bateman, T. Bernard, D. Binns, P. Bork, S. Burge, E. de Castro, P. Coggill, M. Corbett, U. Das, L. Daugherty, L. Duquenne, R. D. Finn, M. Fraser, J. Gough, D. Haft, N. Hulo, D. Kahn, E. Kelly, I. Letunic, D. Lonsdale, R. Lopez, M. Madera, J. Maslen, C. McAnulla, J. McDowall, C. McMenamin, H. Mi, P. Mutowo-Muellenet, N. Mulder, D. Natale, C. Orengo, S. Pesseat, M. Punta, A. F. Quinn, C. Rivoire, A. Sangrador-Vegas, J. D. Selengut, C. J. A. Sigrist, M. Scheremetjew, J. Tate, M. Thimmajanarthanan, P. D. Thomas, C. H. Wu, C. Yeats, S.-Y. Yong, J. Lees, J. Perkins, I. Sillitoe, R. Rentzsch, B. H. Dessailly |
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Přispěvatelé: | Bioinformatique, phylogénie et génomique évolutive (BPGE), Département PEGASE [LBBE] (PEGASE), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Baobab, European Molecular Biology Laboratory (EMBL), Faculty of Life Science and School of Computer Science, University of Manchester [Manchester], The Wellcome Trust Sanger Institute [Cambridge], CMU, Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne (UNIL)-Université de Lausanne (UNIL), Department of Computer Science, University of Bristol [Bristol], J. Craig Venter Institute [La Jolla, USA] (JCVI), Institut National de la Recherche Agronomique (INRA), University of Southern California (USC), University of Cape Town, Georgetown University, University College of London [London] (UCL), European Union [213037], BBSRC [BB/F010508/1], United States National Institutes of Health [GM081084], EMBL-EBI, Université de Lausanne = University of Lausanne (UNIL)-Université de Lausanne = University of Lausanne (UNIL), Georgetown University [Washington] (GU), Hunter, Sarah, Jones, Philip, Mitchell, Alex |
Jazyk: | angličtina |
Rok vydání: | 2012 |
Předmět: |
0106 biological sciences
InterPro [SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] Protein family computer.internet_protocol Simple Modular Architecture Research Tool [SDV]Life Sciences [q-bio] Biology computer.software_genre 01 natural sciences User-Computer Interface 03 medical and health sciences Sequence Analysis Protein Terminology as Topic métagénome Genetics Databases Protein 030304 developmental biology base de données 0303 health sciences Domain prediction Database génome 030302 biochemistry & molecular biology Proteins Articles séquence de protéines Protein Structure Tertiary protéine Corrigendum computer Software XML 010606 plant biology & botany |
Zdroj: | Nucleic Acids Research Nucleic Acids Research, Oxford University Press, 2012, 40, pp.D306-D312 Nucleic Acids Research, Oxford University Press, 2012, 40 (D1), pp.D306-D312. ⟨10.1093/nar/gkr948⟩ Europe PubMed Central Nucleic Acids Research, 2012, 40 (D1), pp.D306-D312. ⟨10.1093/nar/gkr948⟩ Nucleic Acids Research D1 (40), D306-D312. (2012) Nucleic acids research |
ISSN: | 1362-4962 0305-1048 |
DOI: | 10.1093/nar/gkr948⟩ |
Popis: | International audience; InterPro (http://www.ebi.ac.uk/interpro/) is a database that integrates diverse information about protein families, domains and functional sites, and makes it freely available to the public via Web-based interfaces and services. Central to the database are diagnostic models, known as signatures, against which protein sequences can be searched to determine their potential function. InterPro has utility in the large-scale analysis of whole genomes and meta-genomes, as well as in characterizing individual protein sequences. Herein we give an overview of new developments in the database and its associated software since 2009, including updates to database content, curation processes and Web and programmatic interfaces. |
Databáze: | OpenAIRE |
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