Density Functional Calculations for Modeling the Active Site of Nickel−Iron Hydrogenases. 2. Predictions for the Unready and Ready States and the Corresponding Activation Processes
| Autor: | Christian Stadler, Victor M. Fernandez, Yaël Montet, Jose C. Conesa, Anne Volbeda, Juan C. Fontecilla-Camps, Antonio L. De Lacey |
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| Rok vydání: | 2002 |
| Předmět: |
Models
Molecular Hydrogenase Protein Conformation Iron chemistry.chemical_element Protonation Electronic structure Crystallography X-Ray Catalysis Inorganic Chemistry Metal Nickel Computational chemistry Computer Simulation Physical and Theoretical Chemistry Binding Sites Molecular Structure biology Resolution (electron density) Electron Spin Resonance Spectroscopy Active site Sulfur chemistry Chemical physics visual_art visual_art.visual_art_medium biology.protein Anisotropy Desulfovibrio Protons Oxidation-Reduction |
| Zdroj: | Inorganic Chemistry. 41:4424-4434 |
| ISSN: | 1520-510X 0020-1669 |
| Popis: | ZORA relativistic DFT calculations are presented which aim to model the geometric and electronic structure of the active site of NiFe hydrogenases in its EPR-active oxidized states Ni-A (unready state) and Ni-B (ready state). Starting coordinates are taken from the X-ray structure of a mutant of Desulfovibrio fructosovorans hydrogenase refined at 1.81 A resolution. Nine possible candidates for Ni-A and Ni-B are analyzed in terms of their geometric and electronic structure. Comparison of calculated geometric and magnetic resonance parameters with available experimental data indicates that both oxidized states have a micro-hydroxo bridge between the two metal centers. The different electronic structures of both forms can be explained by a modification of a terminal cysteine in Ni-B, best modeled by protonation of the sulfur atom. A possible mechanism for the activation of both oxidized forms is presented. |
| Databáze: | OpenAIRE |
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