Streptomonospora litoralis sp. nov., a halophilic thiopeptides producer isolated from sand collected at Cuxhaven beach
| Autor: | Manfred Rohde, Joachim Wink, Peter Kämpfer, Christian Rückert, Frank Surup, Michael Steinert, Shadi Khodamoradi, Yvonne Mast, Peter Schumann, Richard L. Hahnke |
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| Přispěvatelé: | HZI,Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7,38124 Braunschweig, Germany. |
| Rok vydání: | 2021 |
| Předmět: |
DNA
Bacterial food.ingredient Microbiology Actinobacteria Thiopeptide Streptomonospora food Sand Phylogenetics RNA Ribosomal 16S Botany Gene cluster Molecular Biology Phylogeny Original Paper Phylogenetic tree biology Strain (chemistry) Streptomonospora litoralis sp General Medicine 16S ribosomal RNA biology.organism_classification Type species Rare actinomycete Polyphasic taxonomy |
| Zdroj: | Antonie van Leeuwenhoek Netherlands Antonie Van Leeuwenhoek |
| ISSN: | 1572-9699 0003-6072 |
| Popis: | Strain M2T was isolated from the beach of Cuxhaven, Wadden Sea, Germany, in course of a program to attain new producers of bioactive natural products. Strain M2T produces litoralimycin and sulfomycin-type thiopeptides. Bioinformatic analysis revealed a potential biosynthetic gene cluster encoding for the M2T thiopeptides. The strain is Gram-stain-positive, rod shaped, non-motile, spore forming, showing a yellow colony color and forms extensively branched substrate mycelium and aerial hyphae. Inferred from the 16S rRNA gene phylogeny strain M2T affiliates with the genus Streptomonospora. It shows 96.6% 16S rRNA gene sequence similarity to the type species Streptomonospora salina DSM 44593 T and forms a distinct branch with Streptomonospora sediminis DSM 45723 T with 97.0% 16S rRNA gene sequence similarity. Genome-based phylogenetic analysis revealed that M2T is closely related to Streptomonospora alba YIM 90003 T with a digital DNA-DNA hybridisation (dDDH) value of 26.6%. The predominant menaquinones of M2T are MK-10(H6), MK-10(H8), and MK-11(H6) (> 10%). Major cellular fatty acids are iso-C16:0, anteiso C17:0 and C18:0 10-methyl. The polar lipid profile consisted of diphosphatidylglycerol phosphatidyl glycerol, phosphatidylinositol, phosphatidylcholine, phosphatidylethanolamine, three glycolipids, two unknown phospholipids, and two unknown lipids. The genome size of type strain M2T is 5,878,427 bp with 72.1 mol % G + C content. Based on the results obtained from phylogenetic and chemotaxonomic studies, strain M2T (= DSM 106425 T = NCCB 100650 T) is considered to represent a novel species within the genus Streptomonospora for which the name Streptomonospora litoralis sp. nov. is proposed. |
| Databáze: | OpenAIRE |
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