TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
| Autor: | Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang |
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| Jazyk: | angličtina |
| Rok vydání: | 2005 |
| Předmět: |
DNA
Complementary Sequence analysis Sequence alignment Computational biology Biology Article User-Computer Interface Start codon Databases Genetic Genetics Consensus sequence Humans Codon Expressed Sequence Tags Expressed sequence tag Internet Contig food and beverages Sequence Analysis DNA Stop codon Sequence logo Aspergillus niger Sequence Alignment Algorithms Software |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at https://fungalgenome.concordia.ca/tools/TargetIdentifier.html. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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