Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve

Autor: Telfer, Angela, Young, Monica, Quinn, Jenna, Perez, Kate, Sobel, Crystal, Sones, Jayme, Levesque-Beaudin, Valerie, Derbyshire, Rachael, Fernandez-Triana, Jose, Rougerie, Rodolphe, Thevanayagam, Abinah, Boskovic, Adrian, Borisenko, Alex, Cadel, Alex, Brown, Allison, Pages, Anais, Castillo, Anibal, Nicolai, Annegret, Mockford, Barb, Mockford, Glenn, Bukowski, Belén, Wilson, Bill, Trojahn, Brock, Lacroix, Carole Ann, Brimblecombe, Chris, Hay, Christoper, Ho, Christmas, Steinke, Claudia, Warne, Connor, Cortes, Cristina, Engelking, Daniel, Wright, Danielle, Lijtmaer, Dario, Gascoigne, David, Martich, David, Morningstar, Derek, Neumann, Dirk, Steinke, Dirk, DeBruin, Donna, DeBruin, Marco, Dobias, Dylan, Sears, Elizabeth, Richard, Ellen, Damstra, Emily, Zakharov, Evgeny, Laberge, Frederic, Collins, Gemma, Blagoev, Gergin, Grainge, Gerrie, Ansell, Graham, Meredith, Greg, Hogg, Ian, McKeown, Jaclyn, Topan, Janet, Bracey, Jason, Guenther, Jerry, Sills-Gilligan, Jesse, Addesi, Joseph, Persi, Joshua, Layton, Kara, D'Souza, Kareina, Dorji, Kencho, Grundy, Kevin, Nghidinwa, Kirsti, Ronnenberg, Kylee, Lee, Kyung Min, Xie, Linxi, Lu, Liuqiong, Penev, Lyubomir, Gonzalez, Mailyn, Rosati, Margaret, Kekkonen, Mari Eveliina, Kuzmina, Maria, Iskandar, Marianne, Mutanen, Marko, Fatahi, Maryam, Bauman, Miriam, Nikolova, Nadya, Pentinsaari, Mikko, Ivanova, Natalia, Jones, Nathaniel, Weerasuriya, Nimalka, Monkhouse, Norman, Lavinia, Pablo, Jannetta, Paul, Hanisch, Priscila, McMullin, R. Troy, Flores, Rafael, Mouttet, Raphaëlle, Vender, Reid, Labbee, Renee, Forsyth, Robert, Lauder, Rob, Dickson, Ross, Kroft, Ruth, Miller, Scott, MacDonald, Shannon, Panthi, Sishir, Pedersen, Stephanie, Sobek-Swant, Stephanie, Naik, Suresh, Lipinskaya, Tatsiana, Eagalle, Thanushi, Decaëns, Thibaud, Kosuth, Thibault, Braukmann, Thomas, Woodcock, Tom, Roslin, Tomas Valter, Zammit, Tony, Campbell, Victoria, Dinca, Vlad, Peneva, Vlada, Hebert, Paul, deWaard, Jeremy
Přispěvatelé: Biodiversity institute of Ontario, University of Guelph, Rare Charitable Research Reserve, Canadian National Research Council, Muséum national d'Histoire naturelle (MNHN), University of Waterloo [Waterloo], Université de Montpellier (UM), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia' [Buenos Aires] (MACN), Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET), Biodiversity Institute of Ontario Herbarium, University of Waikato, University of Waikato [Hamilton], University of Western Ontario (UWO), Universidad Autonoma de Santo Domingo DR, Myotistar, Zoologische Staatssammlung Muenchen (SNSB), Grand River Conservation Authority, The University of Western Australia (UWA), National Biodiversity Centre, Ministry of Environment and Tourism in Namibia, University of Oulu, Pensoft, Instituto Vasco de Investigación de Recursos Biológicos Alexander von Humboldt, Smithsonian Institution, Universidad Nacional Autónoma de México (UNAM), Laboratoire de la Santé des Végétaux, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), New Brunswick Museum, London Homeopathy, Ministry of Forests and Soil Conservation, Scientific and Practical Center for Bioresources, National Academy of Sciences of Belarus, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Department of Agricultural Sciences, Bulgarian Academy of Sciences (BAS), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Universidad Nacional Autónoma de México = National Autonomous University of Mexico (UNAM), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), Université Paul-Valéry - Montpellier 3 (UM3)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École pratique des hautes études (EPHE)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Ecology and Evolutionary Biology, Spatial Foodweb Ecology Group
Jazyk: angličtina
Rok vydání: 2015
Předmět:
0106 biological sciences
Barcode Index Numbers
DNA BARCODING
Biodiversity
biotic inventory
Barcode
01 natural sciences
DNA barcoding
law.invention
purl.org/becyt/ford/1 [https]
Floristics & Distribution
RARE CHARITABLE RESEARCH RESERVE
law
Plantae
Faunistics & Distribution
lcsh:QH301-705.5
ComputingMilieux_MISCELLANEOUS
Molecular systematics
Nature reserve
BIOTIC INVENTORY
0303 health sciences
Ecology
BARCODE INDEX NUMBERS
Environmental resource management
1184 Genetics
developmental biology
physiology
SPECIES IDENTIFICATION
biodiversity assessment
rare Charitable Research Reserve
1181 Ecology
evolutionary biology
species identification
USA and Canada
Biology
010603 evolutionary biology
OPERATIONAL TAXONOMIC UNITS
03 medical and health sciences
Systematics
Animalia
BIODIVERSITY ASSESSMENT
purl.org/becyt/ford/1.6 [https]
Ecology
Evolution
Behavior and Systematics
030304 developmental biology
Taxonomy
business.industry
Phylum
Land trust
Fungi
15. Life on land
Taxon
lcsh:Biology (General)
BioBlitz
Operational Taxonomic Units
Taxonomic Paper
Catalogues and Checklists
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
business
Zdroj: Biodiversity Data Journal
Biodiversity Data Journal, Pensoft, 2015, 3, pp.e6313. ⟨10.3897/BDJ.3.e6313⟩
Biodiversity Data Journal, 2015, 3, pp.e6313. ⟨10.3897/BDJ.3.e6313⟩
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Biodiversity Data Journal, Vol 3, Pp 1-176 (2015)
ISSN: 1314-2828
Popis: Background Comprehensive biotic surveys, or 'all taxon biodiversity inventories' (ATBI), have traditionally been limited in scale or scope due to the complications surrounding specimen sorting and species identification. To circumvent these issues, several ATBI projects have successfully integrated DNA barcoding into their identification procedures and witnessed acceleration in their surveys and subsequent increase in project scope and scale. The Biodiversity Institute of Ontario partnered with the rare Charitable Research Reserve and delegates of the 6th International Barcode of Life Conference to complete its own rapid, barcode-assisted ATBI of an established land trust in Cambridge, Ontario, Canada. New information The existing species inventory for the rare Charitable Research Reserve was rapidly expanded by integrating a DNA barcoding workflow with two surveying strategies - a comprehensive sampling scheme over four months, followed by a one-day bioblitz involving international taxonomic experts. The two surveys resulted in 25,287 and 3,502 specimens barcoded, respectively, as well as 127 human observations. This barcoded material, all vouchered at the Biodiversity Institute of Ontario collection, covers 14 phyla, 29 classes, 117 orders, and 531 families of animals, plants, fungi, and lichens. Overall, the ATBI documented 1,102 new species records for the nature reserve, expanding the existing long-term inventory by 49%. In addition, 2,793 distinct Barcode Index Numbers (BINs) were assigned to genus or higher level taxonomy, and represent additional species that will be added once their taxonomy is resolved. For the 3,502 specimens, the collection, sequence analysis, taxonomic assignment, data release and manuscript submission by 100+ co-authors all occurred in less than one week. This demonstrates the speed at which barcode-assisted inventories can be completed and the utility that barcoding provides in minimizing and guiding valuable taxonomic specialist time. The final product is more than a comprehensive biotic inventory - it is also a rich dataset of finescale occurrence and sequence data, all archived and cross-linked in the major biodiversity data repositories. This model of rapid generation and dissemination of essential biodiversity data could be followed to conduct regional assessments of biodiversity status and change, and potentially be employed for evaluating progress towards the Aichi Targets of the Strategic Plan for Biodiversity 2011-2020. Fil: Telfer, Angela C.. University of Guelph; Canadá Fil: Young, Monica R.. University of Guelph; Canadá Fil: Quinn, Jenna. Rare Charitable Research Reserve; Canadá Fil: Perez, Kate. University of Guelph; Canadá Fil: Sobel, Crystal N.. University of Guelph; Canadá Fil: Sones, Jayme E.. University of Guelph; Canadá Fil: Levesque Beaudin, Valerie. University of Guelph; Canadá Fil: Derbyshire, Rachael. University of Guelph; Canadá Fil: Fernandez Triana, Jose. No especifíca; Fil: Rougerie, Rodolphe. Muséum National d'Histoire Naturelle; Francia Fil: Thevanayagam, Abinah. University of Guelph; Canadá Fil: Boskovic, Adrian. University of Guelph; Canadá Fil: Borisenko, Alex V.. University of Guelph; Canadá Fil: Cadel, Alex. University of Waterloo; Canadá Fil: Brown, Allison. University of Guelph; Canadá Fil: Pages, Anais. Université Montpellier II; Francia Fil: Castillo, Anibal H.. University of Guelph; Canadá Fil: Nicolai, Annegret. Universite de Rennes I; Francia Fil: Mockford, Barb Mockford Glenn. Rare Charitable Research Reserve; Canadá Fil: Bukowski Loináz, María Belén. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Wilson, Bill. Rare Charitable Research Reserve; Canadá Fil: Trojahn, Brock. Rare Charitable Research Reserve; Canadá Fil: Lacroix, Carole Ann. University of Guelph; Canadá Fil: Brimblecombe, Chris. The University of Waikato; Nueva Zelanda Fil: Hay, Christoper. Western University; Canadá Fil: Ho, Christmas. University of Guelph; Canadá Fil: Steinke, Claudia. University of Guelph; Canadá Fil: Warne, Connor P.. University of Guelph; Canadá Fil: Cortes, Cristina Garrido. University of Guelph; Canadá Fil: Engelking, Daniel. University of Guelph; Canadá Fil: Wright, Danielle. University of Guelph; Canadá Fil: Lijtmaer, Dario Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Gascoigne, David. Rare Charitable Research Reserve; Canadá Fil: Martich, David Hernandez. Universidad Autonoma de Santo Domingo.; República Dominicana Fil: Morningstar, Derek. No especifíca; Fil: Neumann, Dirk. Zoologische Staatssammlung Muenchen; Alemania Fil: Steinke, Dirk. University of Guelph; Canadá Fil: DeBruin, Donna DeBruin Marco. Rare Charitable Research Reserve; Canadá Fil: Dobias, Dylan. University of Guelph; Canadá Fil: Sears, Elizabeth. University of Guelph; Canadá Fil: Richard, Ellen. University of Guelph; Canadá Fil: Damstra, Emily. Rare Charitable Research Reserve; Canadá Fil: Zakharov, Evgeny V.. University of Guelph; Canadá Fil: Laberge, Frederic. University of Guelph; Canadá Fil: Collins, Gemma E.. The University of Waikato; Nueva Zelanda Fil: Blagoev, Gergin A.. University of Guelph; Canadá Fil: Grainge, Gerrie. Rare Charitable Research Reserve; Canadá Fil: Ansell, Graham. University of Guelph; Canadá Fil: Meredith, Greg. Grand River Conservation Authority; Canadá Fil: Hogg, Ian. The University of Waikato; Nueva Zelanda Fil: McKeown, Jaclyn. University of Guelph; Canadá Fil: Topan, Janet. University of Guelph; Canadá Fil: Bracey, Jason. Rare Charitable Research Reserve; Canadá Fil: Guenther, Jerry. Rare Charitable Research Reserve; Canadá Fil: Sills-Gilligan, Jesse. University of Guelph; Canadá Fil: Addesi, Joseph. University of Guelph; Canadá Fil: Persi, Joshua. University of Guelph; Canadá Fil: Layton, Kara K.S.. University of Western Australia; Australia Fil: D'Souza, Kareina. University of Guelph; Canadá Fil: Dorji, Kencho. National Biodiversity Centre; Bután Fil: Grundy, Kevin. Rare Charitable Research Reserve; Canadá Fil: Nghidinwa, Kirsti. Ministry of Environment and Tourism; Namibia Fil: Ronnenberg, Kylee. University of Guelph; Canadá Fil: Lee, Kyung Min. University of Oulu; Finlandia Fil: Xie, Linxi. Western University; Canadá Fil: Lu, Liuqiong. University of Guelph; Canadá Fil: Penev, Lyubomir. Pensoft; Bulgaria Fil: Gonzalez, Mailyn. No especifíca; Fil: Rosati, Margaret E.. National Museum of Natural History; Estados Unidos Fil: Kekkonen, Mari. University of Guelph; Canadá Fil: Kuzmina, Maria. University of Guelph; Canadá Fil: Iskandar, Marianne. University of Guelph; Canadá Fil: Mutanen, Marko. University of Oulu; Finlandia Fil: Fatahi, Maryam. University of Guelph; Canadá Fil: Pentinsaari, Mikko. University of Oulu; Finlandia Fil: Bauman, Miriam. Rare Charitable Research Reserve; Canadá Fil: Nikolova, Nadya. University of Guelph; Canadá Fil: Ivanova, Natalia V.. University of Guelph; Canadá Fil: Jones, Nathaniel. University of Guelph; Canadá Fil: Weerasuriya, Nimalka. University of Guelph; Canadá Fil: Monkhouse, Norman. University of Guelph; Canadá Fil: Lavinia Oblanca, Pablo Damián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: Jannetta, Paul. University of Guelph; Canadá Fil: Hanisch, Priscila Elena. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina Fil: McMullin, R. Troy. University of Guelph; Canadá Fil: Flores, Rafael Ojeda. Universidad Nacional Autónoma de México; México Fil: Mouttet, Raphaëlle. Laboratoire de la Santé des Végétaux; Francia Fil: Vender, Reid. University of Guelph; Canadá Fil: Labbee, Renee N.. University of Guelph; Canadá Fil: Forsyth, Robert. New Brunswick Museum; Canadá Fil: Lauder, Rob. London Homeopathy; Canadá Fil: Dickson, Ross. Rare Charitable Research Reserve; Canadá Fil: Kroft, Ruth. Rare Charitable Research Reserve; Canadá Fil: Miller, Scott E.. National Museum of Natural History; Estados Unidos Fil: MacDonald, Shannon. University of Guelph; Canadá Fil: Panthi, Sishir. Ministry Of Forests And Soil Conservation; Nepal Fil: Pedersen, Stephanie. University of Guelph; Canadá Fil: Sobek-Swant, Stephanie. Rare Charitable Research Reserve; Canadá Fil: Naik, Suresh. University of Guelph; Canadá Fil: Lipinskaya, Tatsiana. National Academy of Sciences of Belarus; Bielorrusia Fil: Eagalle, Thanushi. University of Guelph; Canadá Fil: Decaëns, Thibaud. Université Montpellier II; Francia Fil: Kosuth, Thibault. University of Guelph; Canadá Fil: Braukmann, Thomas. University of Guelph; Canadá Fil: Woodcock, Tom. Rare Charitable Research Reserve; Canadá Fil: Roslin, Tomas. University of Helsinki; Finlandia Fil: Zammit, Tony. Grand River Conservation Authority; Canadá Fil: Campbell, Victoria. University of Guelph; Canadá Fil: Vlad Dinca. University of Guelph; Canadá Fil: Peneva, Vlada. Bulgarian Academy Of Sciences; Bulgaria Fil: Hebert, Paul David Neil. University of Guelph; Canadá Fil: deWaard, Jeremy R.. University of Guelph; Canadá
Databáze: OpenAIRE
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