Whole genome sequence analysis of an Alachlor and Endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida
| Autor: | Zabrenna Griffiths, Ashish Pathak, Ashvini Chauhan, Paul Stothard, Ayman Y. I. Ewida |
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| Rok vydání: | 2016 |
| Předmět: |
0301 basic medicine
lcsh:QH426-470 010501 environmental sciences Biology 01 natural sciences Biochemistry Genome 03 medical and health sciences Pseudomonas Data in Brief Genetics Gene Genome size 0105 earth and related environmental sciences Whole genome sequencing Strain (chemistry) Accession number (library science) biology.organism_classification lcsh:Genetics 030104 developmental biology GenBank Alachlor Biodegradation Molecular Medicine Endosulfan Biotechnology Whole Genome Sequencing (WGS) |
| Zdroj: | Genomics Data Genomics Data, Vol 8, Iss C, Pp 134-138 (2016) |
| ISSN: | 2213-5960 0000-0000 |
| Popis: | We recently isolated a Pseudomonas sp. strain W15Feb9B from Ochlockonee River, Florida and demonstrated potent biodegradative activity against two commonly used pesticides - Alachlor [(2-chloro-2′,6′-diethylphenyl-N (methoxymethyl)acetanilide)] and Endosulfan [(6,7,8,9,10,10-hexachloro-1,5,5a,6,9,9a-hexahydro-6,9methano-2,3,4-benzo(e)di-oxathiepin-3-oxide], respectively. To further identify the repertoire of metabolic functions possessed by strain W15Feb9B, a draft genome sequence was obtained, assembled, annotated and analyzed. The genome sequence of strain 2385 has been deposited in GenBank under accession number JTKF00000000; BioSample number SAMN03151543. The sequences obtained from strain 2385 assembled into 192 contigs with a genome size of 6,031,588, G + C content of 60.34, and 5512 total number of putative genes. RAST annotated a total of 542 subsystems in the genome of strain W15Feb9B along with the presence of 5360 coding sequences. A genome wide survey of strain W15Feb9B indicated that it has the potential to degrade several other pollutants including atrazine, caprolactam, dioxin, PAHs (such as naphthalene) and several chloroaromatic compounds. |
| Databáze: | OpenAIRE |
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