Shimazuella alba sp. nov. isolated from desert soil and emended description of the genus Shimazuella Park et al. 2007
| Autor: | Hayrettin Saygin, Nevzat Sahin, Hilal Ay |
|---|---|
| Přispěvatelé: | Ondokuz Mayıs Üniversitesi |
| Rok vydání: | 2020 |
| Předmět: |
DNA
Bacterial food.ingredient nov Peptidoglycan Biology medicine.disease_cause Diaminopimelic Acid Biochemistry Microbiology 03 medical and health sciences Monophyly food Shimazuella kribbensis Shimazuella alba sp Species Specificity Shimazuella Genus RNA Ribosomal 16S Botany Genetics medicine Clade Molecular Biology Turkmenistan Phospholipids Phylogeny Soil Microbiology 030304 developmental biology 0303 health sciences Bacillales Base Composition Genome Phylogenetic tree 030306 microbiology Strain (biology) Fatty Acids General Medicine Sequence Analysis DNA 16S ribosomal RNA Bacterial Typing Techniques Thermoactinomycetaceae 16S rRNA gene Desert Climate Karakum desert |
| Zdroj: | Archives of microbiology. 202(7) |
| ISSN: | 1432-072X |
| Popis: | WOS: 000535097400003 PubMed: 32447434 A novel, Gram-stain-positive bacterium, designated KC615(T), was isolated from desert soil which was collected from the Karakum Desert, Turkmenistan. Phylogenetic analysis based on an almost-complete 16S rRNA gene sequence showed that isolate KC615(T) formed a monophyletic clade with Shimazuella kribbensis KCTC 9933(T), sharing 98.2% similarity and polyphasic taxonomic studies confirmed the affiliation of the strain to the genus Shimazuella. The cell-wall peptidoglycan contained meso-diaminopimelic acid. Whole-cell hydrolysates contained ribose and glucose. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and hydroxy-phosphatidylethanolamine. The predominant menaquinones (> 10%) were MK-9(H-4) and MK-10(H-4). Major fatty acids were anteiso-C-15:0, C-20:0 and C-18:0. The genomic DNA G + C content observed for strain KC615(T) was 38.5 mol%. Based on 16S rRNA gene similarity, DNA-DNA hybridization value, chemotaxonomic characteristics and differential physiological properties, strain KC615(T) is considered to represent a novel species within the genus Shimazuella, for which the name Shimazuella alba sp. nov. is proposed. The type strain is KC615(T) (= JCM 33532(T) = CGMCC 4.7616(T)). Ondokuz Mayis University (OMU)Ondokuz Mayis University [PYO.FEN.1901.16.001] This research was supported by Ondokuz Mayis University (OMU), project no. PYO.FEN.1901.16.001. |
| Databáze: | OpenAIRE |
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