Conformational flexibility in the catalytic triad revealed by the high-resolution crystal structure of Streptomyces erythraeus trypsin in an unliganded state
| Autor: | David T. Lodowski, Elise Blankenship, Krishna Vukoti, Masaru Miyagi |
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| Rok vydání: | 2013 |
| Předmět: |
Proteases
Stereochemistry Protein Conformation Crystallography X-Ray Ligands Serine Protein structure Structural Biology Catalytic triad medicine Trypsin chemistry.chemical_classification biology Protein Stability Serine Endopeptidases Active site General Medicine computer.file_format Protein Data Bank Research Papers Crystallography Enzyme chemistry biology.protein Biocatalysis Crystallization computer medicine.drug Saccharopolyspora |
| Zdroj: | Acta crystallographica. Section D, Biological crystallography. 70(Pt 3) |
| ISSN: | 1399-0047 |
| Popis: | With more than 500 crystal structures determined, serine proteases make up greater than one-third of all proteases structurally examined to date, making them among the best biochemically and structurally characterized enzymes. Despite the numerous crystallographic and biochemical studies of trypsin and related serine proteases, there are still considerable shortcomings in the understanding of their catalytic mechanism.Streptomyces erythraeustrypsin (SET) does not exhibit autolysis and crystallizes readily at physiological pH; hence, it is well suited for structural studies aimed at extending the understanding of the catalytic mechanism of serine proteases. While X-ray crystallographic structures of this enzyme have been reported, no coordinates have ever been made available in the Protein Data Bank. Based on this, and observations on the extreme stability and unique properties of this particular trypsin, it was decided to crystallize it and determine its structure. Here, the first sub-angstrom resolution structure of an unmodified, unliganded trypsin crystallized at physiological pH is reported. Detailed structural analysis reveals the geometry and structural rigidity of the catalytic triad in the unoccupied active site and comparison to related serine proteases provides a context for interpretation of biochemical studies of catalytic mechanism and activity. |
| Databáze: | OpenAIRE |
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