GOMoDo: A GPCRs Online Modeling and Docking Webserver
| Autor: | Francesco Musiani, Matteo Cona, Paolo Carloni, Alejandro Giorgetti, Massimo Sandal, Tran Phuoc Duy, Hoang Zung |
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| Přispěvatelé: | Sandal, Massimo, Duy, Tran Phuoc, Cona, Matteo, Zung, Hoang, Carloni, Paolo, Musiani, Francesco, Giorgetti, Alejandro |
| Jazyk: | angličtina |
| Rok vydání: | 2013 |
| Předmět: |
Adrenergic Antagonists
Web server Protein Conformation lcsh:Medicine Ligand Computational biology Molecular Dynamics Simulation Biology Ligands Bioinformatics computer.software_genre Molecular Docking Simulation GPCRs Structural bioinformatics Receptors Adrenergic alpha-2 DOCK Server Humans Homology modeling Databases Protein lcsh:Science G protein-coupled receptor Internet Biochemistry Genetics and Molecular Biology (all) Multidisciplinary Medicine (all) lcsh:R Computational Biology web-server structural bioinformatics Adrenergic Agonists Adrenergic Agonist Adrenergic Antagonist Agricultural and Biological Sciences (all) Docking (molecular) lcsh:Q Receptors Adrenergic beta-2 ddc:500 computer Software Research Article Human |
| Zdroj: | PLoS ONE, Vol 8, Iss 9, p e74092 (2013) PLoS one 8(9), e74092-(2013). doi:10.1371/journal.pone.0074092 PLoS ONE |
| Popis: | G-protein coupled receptors (GPCRs) are a superfamily of cell signaling membrane proteins that include >750 members in the human genome alone. They are the largest family of drug targets. The vast diversity and relevance of GPCRs contrasts with the paucity of structures available: only 21 unique GPCR structures have been experimentally determined as of the beginning of 2013. User-friendly modeling and small molecule docking tools are thus in great demand. While both GPCR structural predictions and docking servers exist separately, with GOMoDo (GPCR Online Modeling and Docking), we provide a web server to seamlessly model GPCR structures and dock ligands to the models in a single consistent pipeline. GOMoDo can automatically perform template choice, homology modeling and either blind or information-driven docking by combining together proven, state of the art bioinformatic tools. The web server gives the user the possibility of guiding the whole procedure. The GOMoDo server is freely accessible at http://molsim.sci.univr.it/gomodo. © 2013 Sandal et al. |
| Databáze: | OpenAIRE |
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