The sequence and de novo assembly of hog deer genome
| Autor: | Xin-Ming Yu, Yan Huijuan, Yu Jianqiu, Chen Shiyi, Shuai Pang, Zhen-Zhen Li, Jia-Po Deng, Zhong Yan, Niu Lili, Qu Yu, Jun Yi, Chen Ang, Xianbo Jia, Chen Weigang, Pu Yang, Guang-Jian Liu, Yue Han, Wei Wang, Wan-Long Huang |
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| Rok vydání: | 2019 |
| Předmět: |
Statistics and Probability
Data Descriptor China 010504 meteorology & atmospheric sciences Sequence analysis animal diseases Population Sequence assembly Genomics Library and Information Sciences Biology 01 natural sciences Genome Education 03 medical and health sciences Animals education 030304 developmental biology 0105 earth and related environmental sciences Whole genome sequencing 0303 health sciences education.field_of_study Deer Molecular Sequence Annotation Sequence Analysis DNA Computer Science Applications Evolutionary biology Genome Biology Statistics Probability and Uncertainty Zoology Information Systems Reference genome |
| Zdroj: | Scientific Data |
| ISSN: | 2052-4463 |
| DOI: | 10.1038/sdata.2018.305 |
| Popis: | Hog deer (Axis porcinus) is a small deer species in family Cervidae and has been undergoing a serious and global decline during the past decades. Chengdu Zoo currently holds a captive population of hog deer with sufficient genetic diversity in China. We sequenced and de novo assembled its genome sequence in the present study. A total of six different insert-size libraries were sequenced and generated 395 Gb of clean data in total. With aid of the linked reads of 10X Genomics, genome sequence was assembled to 2.72 Gb in length (contig N50, 66.04 Kb; scaffold N50, 20.55 Mb), in which 94.5% of expected genes were detected. We comprehensively annotated 22,473 protein-coding genes, 37,019 tRNAs, and 1,058 Mb repeated sequences. The newly generated reference genome is expected to significantly contribute to comparative analysis of genome biology and evolution within family Cervidae. Machine-accessible metadata file describing the reported data (ISA-Tab format) |
| Databáze: | OpenAIRE |
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