Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9T) and comparison to 'Dehalococcoides' strains
| Autor: | Tanja Woyke, Nikos C. Kyrpides, Matt Nolan, William M. Moe, Miriam Land, Fred A. Rainey, Len A. Pennacchio, Yun-Juan Chang, Alla Lapidus, David Bruce, Lynne Goodwin, Hajnalka E. Daligault, Shivakumara Siddaramappa, Lance D. Green, Loren Hauser, Roxanne Tapia, Galina Ovchinnikova, James Han, Susana F. Delano, Chris Detter, Milton S. da Costa, Kimberly S. Bowman, Jun Yan, Jean F. Challacombe, Sam Pitluck, Shunsheng Han |
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| Jazyk: | angličtina |
| Předmět: |
Genetics
Whole genome sequencing Dehalococcoides biology strictly anaerobic Locus (genetics) Chloroflexi Ribosomal RNA biology.organism_classification Genome reductive dechlorination Short Genome Reports contamination groundwater Dehalogenimonas lykanthroporepellens Gene Dehalogenimonas hydrogen utilization |
| Zdroj: | Standards in Genomic Sciences |
| ISSN: | 1944-3277 |
| DOI: | 10.4056/sigs.2806097 |
| Popis: | Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus. |
| Databáze: | OpenAIRE |
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