De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
| Autor: | Kevan L. Main, Tracy A. Sherwood, Dana L. Wetzel |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2019 |
| Předmět: |
FASTQ format
0303 health sciences education.field_of_study Head Kidney Multidisciplinary Overfishing business.industry Population Sequence assembly Zoology Biology lcsh:Computer applications to medicine. Medical informatics Transcriptome 03 medical and health sciences 0302 clinical medicine Aquaculture lcsh:R858-859.7 business education lcsh:Science (General) Blast2GO 030217 neurology & neurosurgery 030304 developmental biology lcsh:Q1-390 |
| Zdroj: | Data in Brief, Vol 22, Iss, Pp 934-939 (2019) |
| ISSN: | 2352-3409 |
| Popis: | Red drum (Sciaenops ocellatus) is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the potential high economic value in both wild and aquaculture commercial fisheries the availability of transcriptomic data for red drum in public databases is limited. The data here represents the transcriptome profiles of three tissues: liver, testis and head kidney from red drum. The data was generated using Illumina high-throughput RNA sequencing, Trinity for de novo assembly and Blast2GO for annotation. Six individual libraries were pooled for sequencing of the transcriptome and the raw fastq reads have been deposited in the NCBI-SRA database (accession number SRP11690 ). |
| Databáze: | OpenAIRE |
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