CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling
| Autor: | Julie A. Dickerson, John L. Van Hemert, Tian Xia |
|---|---|
| Rok vydání: | 2011 |
| Předmět: |
Statistics and Probability
Dynamic network analysis Java Computer science computer.software_genre Models Biological Biochemistry Bridging (programming) 03 medical and health sciences Software Documentation Computer Simulation Molecular Biology Simulation 030304 developmental biology computer.programming_language 0303 health sciences business.industry Systems Biology Large scale network 030302 biochemistry & molecular biology Computer Science Applications Applications Note Computational Mathematics Computational Theory and Mathematics Data mining business computer |
| Zdroj: | Bioinformatics |
| ISSN: | 1367-4811 1367-4803 |
| Popis: | Summary: CytoModeler is an open-source Java application based on the Cytoscape platform. It integrates large-scale network analysis and quantitative modeling by combining omics analysis on the Cytoscape platform, access to deterministic and stochastic simulators, and static and dynamic network context visualizations of simulation results. Availability: Implemented in Java, CytoModeler runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/cytomodeler/. Contact: julied@iastate.edu; netscape@iastate.edu Supplementary Information: Supplementary data are available at Bioinformatics online. |
| Databáze: | OpenAIRE |
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