AliTV—interactive visualization of whole genome comparisons
| Autor: | Sonja Hohlfeld, Markus J. Ankenbrand, Thomas Hackl, Frank Förster |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
0106 biological sciences
0301 basic medicine Genome evolution General Computer Science Interface (Java) Biology computer.software_genre 01 natural sciences Genome lcsh:QA75.5-76.95 03 medical and health sciences Software Interactive visualization Alignment Visualization Comparative genomics business.industry 030104 developmental biology Biological data visualization Data mining lcsh:Electronic computers. Computer science business computer 010606 plant biology & botany |
| Zdroj: | PeerJ Computer Science, Vol 3, p e116 (2017) |
| ISSN: | 2376-5992 |
| Popis: | Whole genome alignments and comparative analysis are key methods in the quest of unraveling the dynamics of genome evolution. Interactive visualization and exploration of the generated alignments, annotations, and phylogenetic data are important steps in the interpretation of the initial results. Limitations of existing software inspired us to develop our new tool AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- genetic information are supported. The user-friendly, web-browser based and highly customizable interface allows rapid exploration and manipulation of the visualized data as well as the export of publication-ready high-quality figures. AliTV is freely available at https://github.com/AliTVTeam/AliTV. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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