MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies
| Autor: | Maurício De A. Mudado, Adélia L. V. Fernandes, Carlos Henrique M. Castelletti, Ana Tereza Ribeiro de Vasconcelos, Geraldo R. G. Armôa, Pablo Nehab-Hess, Luiz Gustavo Guedes Corrêa, Cristina Ribeiro, Ana Carolina R. Guimarães, Claudia Russo, Israel Tojal da Silva, Régis L. Corrêa, Aline R. Da Silveira, Carlos J. M. Viana, Rangel De Souza, Carlos G. Schrago, Daniel Gramkow, Célia S. Caruso, André G. Carneiro, Franklin J. Lima, Gislaine Da Silva P. Pereira, Fabiano Yokaichiya, Bruno M. Carvalho |
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| Rok vydání: | 2005 |
| Předmět: |
Statistics and Probability
Mitochondrial DNA Sequence analysis Relational database Biology Mega computer.software_genre Biochemistry DNA Mitochondrial User-Computer Interface Phylogenetics Transversion Molecular Biology Phylogeny Internet Phylogenetic tree Database Nucleic acid sequence Chromosome Mapping Sequence Analysis DNA Computer Science Applications Computational Mathematics Computational Theory and Mathematics Databases Nucleic Acid computer Sequence Alignment |
| Zdroj: | Bioinformatics (Oxford, England). 21(10) |
| ISSN: | 1367-4803 |
| Popis: | Summary: MamMiBase, the mammalian mitochondrial genome database, is a relational database of complete mitochondrial genome sequences of mammalian species. The database is useful for phylogenetic analysis, since it allows a ready retrieval of nucleotide and aminoacid individual alignments, in three different formats (NEXUS for PAUP program, for MEGA program and for PHYLIP program) of the 13 protein coding mitochondrial genes. The user may download the sequences that are useful for him/her based on their parameters values, such as sequence length, p-distances, base content, transition transversion ratio, gamma, which are also given by MamMiBase. A simple phylogenetic tree (neighbor-joining tree with Jukes Cantor distance) is also available for download, useful for parameter calculations and other simple tasks. Availability: MamMiBase is available at http://www.mammibase.lncc.br Contact: atrv@lncc.br |
| Databáze: | OpenAIRE |
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