Scipiontomo: towards cryo-electron tomography software integration, reproducibility, and validation
Autor: | Jiménez de la Morena, Jorge, Conesa, Pablo, Fonseca, Yunior Cesar, de Isidro-Gómez, Federico Pedro, Herreros, David, Fernández-Giménez, E., Strelak, David, Moebel, Emmanuel, Buchholz, Tim-Oliver, Jug, Florian, Martinez-Sanchez, Antonio, Harastani, Mohamad, Jonic, Slavica, Conesa, Jose Javier, Cuervo, Ana, Losana, Patricia, Sánchez, Irene, Iceta, Mikel, del Cano, Laura, Gragera, Marcos, Melero, Roberto, Sharov, Grigory, Castaño-Díez, Daniel, Koster, Aart, Piccirillo, Jonathan Gabriel, Vilas, Jose Luis, Otón, J., Marabini, Roberto, Sorzano, Carlos Oscar, Carazo, Jose Maria |
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Přispěvatelé: | Centro Nacional de Biotecnología [Madrid] (CNB-CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Masaryk University [Brno] (MUNI), Space-timE RePresentation, Imaging and cellular dynamics of molecular COmplexes (SERPICO), Inria Rennes – Bretagne Atlantique, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG), Max-Planck-Gesellschaft, Universidad de Oviedo [Oviedo], Bioinformatique et BioPhysique [IMPMC] (IMPMC_BIBIP), Institut de minéralogie, de physique des matériaux et de cosmochimie (IMPMC), Muséum national d'Histoire naturelle (MNHN)-Institut de recherche pour le développement [IRD] : UR206-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de recherche pour le développement [IRD] : UR206-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratory of Molecular Biology [Cambridge], Medical Research Council, University of Basel (Unibas), Universiteit Leiden, ALBA Synchrotron light source [Barcelone], Universidad Autónoma de Madrid (UAM), ANR-20-CE11-0020,CRYOCHROM,Organisation structurale et fonctionnelle de la chromatine à l'échelle du nucléosome. Analyse par cryo tomographie électronique de sections vitreuses et modélisation in silico(2020), ANR-19-CE11-0008,EMBioMolMov,Décryptage des mouvements moléculaires continus des complexes biomacromoléculaires par de nouvelles méthodes d'analyse d'images de cryo-microscopie électronique(2019) |
Jazyk: | angličtina |
Rok vydání: | 2022 |
Předmět: |
Electron Microscope Tomography
[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM] Structural Biology [INFO.INFO-TI]Computer Science [cs]/Image Processing [eess.IV] Cryoelectron Microscopy Image Processing Computer-Assisted Reproducibility of Results [INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE] Scipion Algorithms Software Cryo-electron tomography |
Zdroj: | Scopus Journal of Structural Biology Journal of Structural Biology, 2022, 214 (3), pp.107872. ⟨10.1016/j.jsb.2022.107872⟩ Journal of Structural Biology, 214(3). ACADEMIC PRESS INC ELSEVIER SCIENCE |
ISSN: | 1047-8477 1095-8657 |
DOI: | 10.1016/j.jsb.2022.107872⟩ |
Popis: | The authors acknowledge the economical support from MICINN to the Instruct Image Processing Center (I2PC) as part of the Spanish participation in Instruct-ERIC, the European Strategic Infrastructure Project (ESFRI) in the area of Structural Biology and Grant PID2019- 104757RB-I00 funded by MCIN/AEI/ 10.13039/501100011033/ and “ERDF A way of making Europe”, by the “European Union”, the support of the French National Research Agency - ANR (ANR-20-CE11-0020-03 and ANR-19-CE11-0008-01 to S.J.). The project that gave rise to these results received the support of a fellowship from the “la Caixa’’ Foundation (ID 100010434). The fellowship code is LCF/BQ/DI18/11660021. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 713673. European Union (EU) and Horizon 2020 through grant: HighResCells (ERC - 2018 - SyG, Proposal: 810057) EOSC Life (INFRAEOSC-04-2018, Proposal: 824087) (...) Jiménez de la Morena J, Conesa P, Fonseca YC, de Isidro-Gómez FP, Herreros D, Fernández-Giménez E, Strelak D, Moebel E, Buchholz TO, Jug F, Martinez-Sanchez A, Harastani M, Jonic S, Conesa JJ, Cuervo A, Losana P, Sánchez I, Iceta M, Del Cano L, Gragera M, Melero R, Sharov G, Castaño-Díez D, Koster A, Piccirillo JG, Vilas JL, Otón J, Marabini R, Sorzano COS, Carazo JM |
Databáze: | OpenAIRE |
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