A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)

Autor: Nathalie Boissot, Hugo E. Cuevas, Gayle Dace, Nobuko Fukino, Catherine Dogimont, Aurora Díaz, Satoru Matsumoto, René Hofstede, Haiying Zhang, Peio Ziarsolo, Antonio J. Monforte, Michel Pitrat, Nurit Katzir, Zhanjun Fei, Rotem Harel-Beja, Paul van Koert, Juan Zalapa, Yong Xu, Shahar Cohen, Jack E. Staub, Jordi Garcia-Mas, Mohamed Fergany, Galil Tzuri, Arthur A. Schaffer, M. Oliver, Vitaly Portnoy, Gelsomina Formisano, José Blanca
Přispěvatelé: Universitat Politècnica de València (UPV), Institute of Agrifood Research and Technology (IRTA), Ain Shams University (ASU), Università degli studi di Napoli Federico II, Boyce Thompson Institute [Ithaca], United States Department of Agriculture (USDA), Syngeta Biotechnology, Partenaires INRAE, Syngeta Seeds, Génétique et Amélioration des Fruits et Légumes (GAFL), Institut National de la Recherche Agronomique (INRA), KeyGene [Wageningen], Agricultural Research Organization, National Engineering Research Center for Vegetables (NERCV), National Institute of Vegetable and Tea Science
Rok vydání: 2021
Předmět:
0106 biological sciences
Germplasm
carte génétique
Genetic Linkage
population
ComputingMilieux_LEGALASPECTSOFCOMPUTING
plant
Plant Science
01 natural sciences
chemistry.chemical_compound
Cucumis melo
Molecular marker
lcsh:Botany
melon
lignée quasi isogénique
genetic map
2. Zero hunger
Genetics
cartographie genetique
0303 health sciences
beta carotene
Vegetal Biology
qtl
high density
fruit quality trait
Chromosome Mapping
food and beverages
lcsh:QK1-989
plante
marker assisted selection
marqueur moléculaire
Genome
Plant
sélection assistée par marqueurs
Research Article
Crops
Agricultural
Genetic Markers
construction
Quantitative Trait Loci
Genomics
genetique vegetale
Biology
Quantitative trait locus
Cucumis
Chromosomes
Plant
molecular marker
near isogenic line
identification
qtls
03 medical and health sciences
Genetic linkage
[SDV.BV]Life Sciences [q-bio]/Vegetal Biology
030304 developmental biology
Synteny
beta carotène
Polymorphism
Genetic
légume
Sequence Analysis
DNA
GENETICA
chemistry
Genetic marker
Evolutionary biology
plante légumière
Epistasis
Biologie végétale
010606 plant biology & botany
Zdroj: Recercat: Dipósit de la Recerca de Catalunya
Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
BMC Plant Biology
BMC Plant Biology, BioMed Central, 2011, 11, pp.111. ⟨10.1186/1471-2229-11-111⟩
BMC Plant Biology, Vol 11, Iss 1, p 111 (2011)
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
instname
BMC Plant Biology (11), 111. (2011)
Recercat. Dipósit de la Recerca de Catalunya
Digital.CSIC. Repositorio Institucional del CSIC
ISSN: 1471-2229
Popis: This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.
[Background]: A number of molecular marker linkage maps have been developed for melon (Cucumis melo L.) over the last two decades. However, these maps were constructed using different marker sets, thus, making comparative analysis among maps difficult. In order to solve this problem, a consensus genetic map in melon was constructed using primarily highly transferable anchor markers that have broad potential use for mapping, synteny, and comparative quantitative trait loci (QTL) analysis, increasing breeding effectiveness and efficiency via marker-assisted selection (MAS). [Results]: Under the framework of the International Cucurbit Genomics Initiative (ICuGI, http://www.icugi.org), an integrated genetic map has been constructed by merging data from eight independent mapping experiments using a genetically diverse array of parental lines. The consensus map spans 1150 cM across the 12 melon linkage groups and is composed of 1592 markers (640 SSRs, 330 SNPs, 252 AFLPs, 239 RFLPs, 89 RAPDs, 15 IMAs, 16 indels and 11 morphological traits) with a mean marker density of 0.72 cM/marker. One hundred and ninety-six of these markers (157 SSRs, 32 SNPs, 6 indels and 1 RAPD) were newly developed, mapped or provided by industry representatives as released markers, including 27 SNPs and 5 indels from genes involved in the organic acid metabolism and transport, and 58 EST-SSRs. Additionally, 85 of 822 SSR markers contributed by Syngenta Seeds were included in the integrated map. In addition, 370 QTL controlling 62 traits from 18 previously reported mapping experiments using genetically diverse parental genotypes were also integrated into the consensus map. Some QTL associated with economically important traits detected in separate studies mapped to similar genomic positions. For example, independently identified QTL controlling fruit shape were mapped on similar genomic positions, suggesting that such QTL are possibly responsible for the phenotypic variability observed for this trait in a broad array of melon germplasm. [Conclusions]: Even though relatively unsaturated genetic maps in a diverse set of melon market types have been published, the integrated saturated map presented herein should be considered the initial reference map for melon. Most of the mapped markers contained in the reference map are polymorphic in diverse collection of germplasm, and thus are potentially transferrable to a broad array of genetic experimentation (e.g., integration of physical and genetic maps, colinearity analysis, map-based gene cloning, epistasis dissection, and marker-assisted selection).
This work was supported in part by SNC Laboratoire ASL, Ruiter Seeds B.V., Enza Zaden B.V., Gautier Semences S.A., Nunhems B.V., Rijk Zwaan B.V., Sakata Seed Inc, Semillas Fitó S.A., Seminis Vegetable Seeds Inc, Syngenta Seeds B.V., Takii and Company Ltd, Vilmorin & Cie S.A., and Zeraim Gedera Ltd (all of them as part of the support to the ICuGI); the grants AGL2009-12698-C02-02 from the Spanish "Ministerio de Ciencia e Innovación" to AJM. NK lab was supported in part by Research Grant Award No. IS-4223-09C from BARD, the United States - Israel Binational Agricultural Research and Development Fund, and in part by Israel Science Foundation Grant No. 386-06, De Ruiter Seeds, Enza Zaden, Keygene, Rijk Zwaan, Sakata Seed Corporation, Semillas Fitó, Syngenta Seeds and Vilmorin Clause & Cie. AD was supported by a JAE-Doc contract from "Consejo Superior de Investigaciones Científicas" (CSIC-Spain). MF was supported by a postdoctoral contract from CRAG. The research carried out at YX's laboratory was supported by Chinese funds (Grant No.2008-Z42(3), 5100001, 2010AA101907).
Databáze: OpenAIRE
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