Molecular Diversity and Association Analysis of Drought and Salt Tolerance in Gossypium hirsutum L. Germplasm
| Autor: | Yinhua Jia, Li-ru Wang, Zhong-li Zhou, Shou-Pu He, Jun-Ling Sun, Xi-wen Wang, Bao-Yin Pang, Xiong-Ming Du, Zao-e Pan |
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| Jazyk: | angličtina |
| Rok vydání: | 2014 |
| Předmět: |
Germplasm
Linkage disequilibrium Agriculture (General) cotton germplasm Plant Science Quantitative trait locus Biology Biochemistry S1-972 Food Animals Genetic variation Botany Association mapping Genetic association Genetics linkage disequilibrium (LD) Genetic diversity Ecology fungi food and beverages genetic diversity simple sequence repeats (SSR) markers association analysis Microsatellite Animal Science and Zoology Agronomy and Crop Science Food Science |
| Zdroj: | Journal of Integrative Agriculture, Vol 13, Iss 9, Pp 1845-1853 (2014) |
| ISSN: | 2095-3119 |
| Popis: | Association mapping is a useful tool for the detection of genes selected during plant domestication based on their linkage disequilibrium (LD). This study was carried out to estimate genetic diversity, population structure and the extent of LD to develop an association framework in order to identify genetic variations associated with drought and salt tolerance traits. 106 microsatellite marker primer pairs were used in 323 Gossypium hirsutum germplasms which were grown in the drought shed and salt pond for evaluation. Polymorphism (PIC=0.53) was found, and three groups were detected ( K =3) with the second likelihood ΔK using STRUCTURE software. LD decay rates were estimated to be 13-15 cM at r 2 ≥0.20. Significant associations between polymorphic markers and drought and salt tolerance traits were observed using the general linear model (GLM) and mixed linear model (MLM) ( P ≤0.01). The results also demonstrated that association mapping within the population structure as well as stratification existing in cotton germplasm resources could complement and enhance quantitative trait loci (QTLs) information for marker-assisted selection. |
| Databáze: | OpenAIRE |
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