Ecological plant epigenetics: Evidence from model and non-model species, and the way forward

Autor: Sonja J. Prohaska, Koen J. F. Verhoeven, Claude Becker, Marie Mirouze, Christina L. Richards, Peter F. Stadler, Etienne Bucher, Christian Lampei, Walter Durka, Lars Opgenoorth, Emiliano Trucchi, Jan Engelhardt, Ovidiu Paun, Conchita Alonso, Bence Gáspár, Stefan A. Rensing, Ilkka Kronholm, Vít Latzel, Maria Colomé-Tatché, Kristian K. Ullrich, Andreas Gogol-Döring, Thomas P. van Gurp, Katrin Heer, Oliver Bossdorf, Ivo Grosse
Přispěvatelé: University of South Florida [Tampa] (USF), Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Gregor Mendel Institute of Molecular Plant Biology (GMI), Austrian Academy of Sciences (OeAW), Plant Evolutionary Ecology, University of Tübingen, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, European Research Institute for the Biology of Ageing [Groningen] (ERIBA), University Medical Center Groningen [Groningen] (UMCG), Helmholtz Zentrum München = German Research Center for Environmental Health, TUM School of Life Sciences Weihenstephan, Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), German Centre for Integrative Biodiversity Research (iDiv), Institut für Informatik [Leipzig], Universität Leipzig, Institut für Informatik / Institute of Computer Science [Halle], Martin-Luther-University Halle-Wittenberg, Netherlands Institute of Ecology - NIOO-KNAW (NETHERLANDS), Philipps Universität Marburg = Philipps University of Marburg, University of Jyväskylä (JYU), Institute of Plant Breeding, Seed Science and Population Genetics, Universität Hohenheim, Institute of Botany of the Czech Academy of Sciences (IB / CAS), Czech Academy of Sciences [Prague] (CAS), Diversité, adaptation, développement des plantes (UMR DIADE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Department of Botany and Biodiversity Research, University of Vienna [Vienna], Santa Fe Institute, Centre for Biological Signaling Studies [Freiburg] (BIOSS), University of Freiburg [Freiburg], Max Planck Institute for Mathematics in the Sciences (MPI-MiS), Max-Planck-Gesellschaft, Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences [Oslo], Faculty of Mathematics and Natural Sciences [Oslo], University of Oslo (UiO)-University of Oslo (UiO)-Faculty of Mathematics and Natural Sciences [Oslo], University of Oslo (UiO)-University of Oslo (UiO), AGROCAMPUS OUEST-Institut National de la Recherche Agronomique (INRA)-Université d'Angers (UA), Laboratoire de Physique Théorique et Modèles Statistiques (LPTMS), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Helmholtz Zentrum für Umweltforschung (UFZ), Inst Comp Sci, Martin-Luther-Universität Halle Wittenberg (MLU), Institute of Experimental Ecology Germany, Conservation Biology and Ecology, Universität Ulm - Ulm University [Ulm, Allemagne], Department of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research (MPIPZ), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Carl-Maria-von-Weber-Gesamtausgabe, Universität Paderborn (UPB), Department of Zoology [Oxford], University of Oxford [Oxford], Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11), Terrestrial Ecology (TE)
Jazyk: angličtina
Rok vydání: 2017
Předmět:
0106 biological sciences
0301 basic medicine
EPIGENOMIC DIVERSITY
[SDV]Life Sciences [q-bio]
Species distribution
INDIVIDUAL VARIATION
Phenotypic plasticity
01 natural sciences
Genome
phenotypic plasticity
Epigenesis
Genetic
DNA METHYLATION VARIATION
ComputingMilieux_MISCELLANEOUS
0303 health sciences
Ecology
bioinformatiikka
genomiikka
Genomics
Plants
Bioinformatics
ecological epigenetics
genomics
response to environment
Ecology
Evolution
Behavior and Systematics
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Habitat
epigenetiikka
international
PHYSCOMITRELLA-PATENS
PERENNIAL HERB
kasviekologia
Ecological epigenetics
SEQUENCING DATA
Evolution
Ecology (disciplines)
Biology
010603 evolutionary biology
[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics
03 medical and health sciences
Polyploid
Behavior and Systematics
kasvit
Epigenetics
Ecosystem
030304 developmental biology
HERB HELLEBORUS-FOETIDUS
Ecological Epigenetics
Phenotypic Plasticity
Response To Environment
Ambientale
Response to environment
DNA Methylation
15. Life on land
Ecological realism
Plant ecology
030104 developmental biology
ARABIDOPSIS-THALIANA
Bioinformatics
ecological epigenetics
genomics
phenotypic plasticity
response to environment
Adaptation
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
NATURAL-POPULATIONS
Zdroj: Ecology Letters
Ecology Letters, 2017, 20 (12), pp.1576-1590. ⟨10.1111/ele.12858⟩
Ecology Letters, Wiley, 2017, 20 (12), pp.1576-1590. ⟨10.1111/ele.12858⟩
Ecol. Lett. 20, 1576-1590 (2017)
Digital.CSIC. Repositorio Institucional del CSIC
instname
Ecology Letters, 20(12), 1576-1590. Wiley-Blackwell
ISSN: 1461-023X
1461-0248
DOI: 10.1111/ele.12858⟩
Popis: Growing evidence shows that epigenetic mechanisms contribute to complex traits, with implications across many fields of biology. In plant ecology, recent studies have attempted to merge ecological experiments with epigenetic analyses to elucidate the contribution of epigenetics to plant phenotypes, stress responses, adaptation to habitat, and range distributions. While there has been some progress in revealing the role of epigenetics in ecological processes, studies with non-model species have so far been limited to describing broad patterns based on anonymous markers of DNA methylation. In contrast, studies with model species have benefited from powerful genomic resources, which contribute to a more mechanistic understanding but have limited ecological realism. Understanding the significance of epigenetics for plant ecology requires increased transfer of knowledge and methods from model species research to genomes of evolutionarily divergent species, and examination of responses to complex natural environments at a more mechanistic level. This requires transforming genomics tools specifically for studying non-model species, which is challenging given the large and often polyploid genomes of plants. Collaboration among molecular geneticists, ecologists and bioinformaticians promises to enhance our understanding of the mutual links between genome function and ecological processes.
Databáze: OpenAIRE
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