The UCSC genome browser database: update 2007
| Autor: | Kuhn, R M, Karolchik, D, Zweig, A S, Trumbower, H, Thomas, D J, Thakkapallayil, A, Sugnet, C W, Stanke, M, Smith, K E, Siepel, A, Rosenbloom, K R, Rhead, B, Raney, B J, Pohl, A, Pedersen, J S, Hsu, F, Hinrichs, A S, Harte, R A, Diekhans, M, Clawson, H, Bejerano, G, Barber, G P, Baertsch, R, Haussler, D, Kent, W J, Pedersen, Jakob Skou |
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| Rok vydání: | 2007 |
| Předmět: |
Genomics
Genome browser Regulatory Sequences Nucleic Acid Biology computer.software_genre Polymorphism Single Nucleotide Genome Linkage Disequilibrium Mice Open Reading Frames User-Computer Interface Annotation Databases Genetic Computer Graphics Genetics Animals Humans natural sciences Conserved Sequence Comparative genomics Internet Base Sequence Database Genome Human Articles Rats Visualization ComputingMethodologies_PATTERNRECOGNITION SNP annotation Cattle Human genome computer |
| Zdroj: | Nucleic Acids Research Kuhn, R M, Karolchik, D, Zweig, A S, Trumbower, H, Thomas, D J, Thakkapallayil, A, Sugnet, C W, Stanke, M, Smith, K E, Siepel, A, Rosenbloom, K R, Rhead, B, Raney, B J, Pohl, A, Pedersen, J S, Hsu, F, Hinrichs, A S, Harte, R A, Diekhans, M, Clawson, H, Bejerano, G, Barber, G P, Baertsch, R, Haussler, D, Kent, W J & Pedersen, J S 2007, ' The UCSC genome browser database : update 2007 ', Nucleic Acids Research, vol. 35, no. Database issue, pp. D668-73 . https://doi.org/10.1093/nar/gkl928 |
| ISSN: | 1362-4962 0305-1048 |
| DOI: | 10.1093/nar/gkl928 |
| Popis: | The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate species. The Genome Browser displays a wide variety of annotations at all scales from the single nucleotide level up to a full chromosome and includes assembly data, genes and gene predictions, mRNA and EST alignments, and comparative genomics, regulation, expression and variation data. The database is optimized for fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. In the past year, 22 new assemblies and several new sets of human variation annotation have been released. New features include VisiGene, a fully integrated in situ hybridization image browser; phyloGif, for drawing evolutionary tree diagrams; a redesigned Custom Track feature; an expanded SNP annotation track; and many new display options. The Genome Browser, other tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/. |
| Databáze: | OpenAIRE |
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