New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses
| Autor: | Yingying Zhang, Richard Reinhardt, Kurt Hecher, Heinrich Stamerjohanns, Albert Jeltsch, Christian Rohde |
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| Rok vydání: | 2009 |
| Předmět: |
Genetics
business.industry Bisulfite sequencing Sequence Analysis DNA Methylation Computational biology DNA Methylation Biology General Biochemistry Genetics and Molecular Biology Cell Line Data set DNA methylation medicine Cluster Analysis Humans Sulfites Web application BDPC Epigenetics business Cluster analysis Biotechnology medicine.drug |
| Zdroj: | BioTechniques. 47:781-783 |
| ISSN: | 1940-9818 0736-6205 |
| DOI: | 10.2144/000113196 |
| Popis: | The Bisulfite Sequencing Data Presentation and Compilation (BDPC) web interface for compilation and presentation of data from bisulfite sequencing DNA methylation studies has been improved by adding a new module. This module allows visualization of the whole data set in form of a heatmap of DNA methylation levels and clustering and comparison of tissue methylation patterns. It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved. |
| Databáze: | OpenAIRE |
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