A genome-wide diversity study of grapevine rupestris stem pitting-associated virus
| Autor: | Monique Beuve, Emmanuelle Vigne, Olivier Lemaire, Jean-Michel Hily, Gérard Demangeat, Thierry Candresse |
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| Přispěvatelé: | Santé de la vigne et qualité du vin (SVQV), Institut National de la Recherche Agronomique (INRA)-Université de Strasbourg (UNISTRA), Biologie du fruit et pathologie (BFP), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1 |
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
In silico genome wide diversity study Computational biology Genome Viral Biology Genome DNA sequencing Virus GRSPaV Plant Viruses 03 medical and health sciences Virology Plant virus grapevine rupestris stem pitting-associated virus Vitis Phylogeny Plant Diseases Genetic Variation General Medicine Sequence Analysis DNA [SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy 030104 developmental biology Metagenomics Viral evolution [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology Flexiviridae Grapevine Rupestris stem pitting associated virus |
| Zdroj: | Archives of Virology Archives of Virology, Springer Verlag, 2018, 163 (11), pp.3105-3111. ⟨10.1007/s00705-018-3945-0⟩ |
| ISSN: | 1432-8798 0304-8608 |
| DOI: | 10.1007/s00705-018-3945-0⟩ |
| Popis: | UMR BFP - Equipe Virologie; International audience; Over the last decade, many scientific disciplines have been impacted by the dawn of new sequencing techniques (HTS: high throughput sequencing). Plant pathology and more specifically virology have been greatly transformed by this 'metagenomics' paradigm shift. Such tools significantly facilitate disease diagnostics with tremendous sensitivity, providing invaluable information such as an exhaustive list of viruses being present in a sample as well as their relative concentration. In addition, many new plant viruses have been discovered. Using RNAseq technology, in silico reconstruction of complete viral genome sequences is easily attainable. This step is of importance for taxonomy, population structure analyses, phylogeography and viral evolution studies. Here, after assembling 81 new near-complete genome sequences of grapevine rupestris stem pitting-associated virus (GRSPaV), we performed a genome-wide diversity study of this ubiquitous virus of grapevine worldwide. |
| Databáze: | OpenAIRE |
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