Additional file 5 of Semantic clustering analysis of E3-ubiquitin ligases in gastrointestinal tract defines genes ontology clusters with tissue expression patterns

Autor: Iatsiuk, Veronika, Malinka, Frantisek, Pickova, Marketa, Tureckova, Jolana, Klema, Jiri, Spoutil, Frantisek, Novosadova, Vendula, Prochazka, Jan, Sedlacek, Radislav
Rok vydání: 2022
DOI: 10.6084/m9.figshare.19586887
Popis: Additional file 5. Fig. S1. Workflow of semantic cluster analysis. The original qPCR data matrix is divided into 3 groups of samples according to their type of tissue. For each tissue combination, we performed statistical analysis to reveal two sets of genes: organ specific and general genes. Together with ontologies, the sem1R algorithm is run for each set of genes individually to induce a hypothesis describing specifics of organ specific genes over the general ones. Fig. S2. Heatmap of the differential expression of Ub-ligases and ubiquitination-related genes after induced epithelial damage. Fig. S3. Differential expression of Ub-ligases and ubiquitination-related genes after induced epithelial damage.
Databáze: OpenAIRE