Flavobacterium collinsense sp. nov., isolated from a till sample of an Antarctic glacier
| Autor: | Xulu Chang, Sangsang Deng, Chengxiang Fang, Xia Qiu, Fan Jiang, Zhihao Qu, Xuyang Da, Fang Peng, Lvzhi Ren, Yumin Zhang |
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| Rok vydání: | 2016 |
| Předmět: |
DNA
Bacterial 0301 basic medicine Molecular Sequence Data Antarctic Regions Flavobacterium Microbiology 03 medical and health sciences Phylogenetics RNA Ribosomal 16S Ice Cover Gene Phospholipids Phylogeny Ecology Evolution Behavior and Systematics Base Composition biology Strain (chemistry) Phylogenetic tree Fatty Acids Vitamin K 2 Sequence Analysis DNA General Medicine 16S ribosomal RNA biology.organism_classification Bacterial Typing Techniques 030104 developmental biology Flavobacterium collinsense Bacteria |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 66:172-177 |
| ISSN: | 1466-5034 1466-5026 |
| DOI: | 10.1099/ijsem.0.000688 |
| Popis: | A novel rod-shaped, Gram-stain-negative, non-gliding and aerobic strain surrounded by a multilayer capsule, designated 4-T-2T, was isolated from a till sample of Collins glacier front, Antarctica. The bacterium formed yellow, circular, convex and smooth colonies. Growth occurred at 4-28 °C (optimum18-20 °C), at pH 7.0-10.0 (optimum pH 9.0) and with 0-1 % NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain 4-T-2T belonged to the genus Flavobacterium. Strain 4-T-2T shared the highest 16S rRNA gene sequence similarity with the type strain of Flavobacterium algicola (96.7 %). The DNA G+C content of strain 4-T-2T was 36.2 mol%. The only menaquinone was MK-6. The major cellular fatty acids were iso-C15 : 0, iso-C15 : 1 G, iso-C16 : 0 and summed feature 9 (comprising iso-C17 : 1ω9c and/or 10-methyl C16 : 0). Polar lipid profile consisted phosphatidylethanolamine, one unidentified aminolipid, one unidentified aminophospholipid and one unidentified lipid. On the basis of phylogenetic, physiological and chemotaxonomic data, strain 4-T-2T is considered to represent a novel species of the genus Flavobacterium, for which the name Flavobacterium collinsense sp. nov. is proposed. The type strain is 4-T-2T ( = CCTCC AB 2014004T = LMG 28257T). |
| Databáze: | OpenAIRE |
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