Crystal Structure of Nonstructural Protein 10 from the Severe Acute Respiratory Syndrome Coronavirus Reveals a Novel Fold with Two Zinc-Binding Motifs
| Autor: | Peter Kuhn, Raymond C. Stevens, Alexei Brooun, Vanitha Subramanian, Jeremiah S. Joseph, Jeffrey Velasquez, Mark T. Griffith, Kumar Singh Saikatendu, Kin Moy, Michael J. Buchmeier, Maneesh K. Yadav, Benjamin W. Neuman |
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| Rok vydání: | 2006 |
| Předmět: |
Protein Folding
Protein Conformation Viral protein Molecular Sequence Data Immunology RNA-dependent RNA polymerase Viral Nonstructural Proteins Biology Crystallography X-Ray medicine.disease_cause Microbiology chemistry.chemical_compound Virology medicine Amino Acid Sequence Coronavirus NSP1 Structure and Assembly C-terminus RNA Zinc Fingers Severe acute respiratory syndrome-related coronavirus Biochemistry chemistry Insect Science Nucleic acid DNA |
| Zdroj: | Journal of Virology |
| ISSN: | 1098-5514 0022-538X |
| DOI: | 10.1128/jvi.00467-06 |
| Popis: | The severe acute respiratory syndrome coronavirus (SARS-CoV) possesses a large 29.7-kb positive-stranded RNA genome. The first open reading frame encodes replicase polyproteins 1a and 1ab, which are cleaved to generate 16 “nonstructural” proteins, nsp1 to nsp16, involved in viral replication and/or RNA processing. Among these, nsp10 plays a critical role in minus-strand RNA synthesis in a related coronavirus, murine hepatitis virus. Here, we report the crystal structure of SARS-CoV nsp10 at a resolution of 1.8 Å as determined by single-wavelength anomalous dispersion using phases derived from hexatantalum dodecabromide. nsp10 is a single domain protein consisting of a pair of antiparallel N-terminal helices stacked against an irregular β-sheet, a coil-rich C terminus, and two Zn fingers. nsp10 represents a novel fold and is the first structural representative of this family of Zn finger proteins found so far exclusively in coronaviruses. The first Zn finger coordinates a Zn 2+ ion in a unique conformation. The second Zn finger, with four cysteines, is a distant member of the “gag-knuckle fold group” of Zn 2+ -binding domains and appears to maintain the structural integrity of the C-terminal tail. A distinct clustering of basic residues on the protein surface suggests a nucleic acid-binding function. Gel shift assays indicate that in isolation, nsp10 binds single- and double-stranded RNA and DNA with high-micromolar affinity and without obvious sequence specificity. It is possible that nsp10 functions within a larger RNA-binding protein complex. However, its exact role within the replicase complex is still not clear. |
| Databáze: | OpenAIRE |
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