Towards unraveling macroecological patterns in rhizosphere microbiomes

Autor: Wayne Dawson, Caroline Brunel, Mark van Kleunen, Kelly S. Ramirez, Robin Pouteau, Michael Pester
Přispěvatelé: Taizhou University, UMR - Interactions Plantes Microorganismes Environnement (UMR IPME), Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Duke University [Durham], Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH / Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ), Netherlands Institute of Ecology - NIOO-KNAW (NETHERLANDS), Terrestrial Ecology (TE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud]), Durham University
Jazyk: angličtina
Rok vydání: 2020
Předmět:
0106 biological sciences
0301 basic medicine
Plant Science
Biology
Reference database
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics
Phylogenetics and taxonomy
01 natural sciences
Plant Roots
Rhizosphere microbiome
Meta-analysis of sequencing data
03 medical and health sciences
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology
environment/Ecosystems
F01 - Culture des plantes
ddc:570
Microbiome
Temporal scales
Plan_S-Compliant_TA
Amplicon sequencing variants
Soil Microbiology
Rhizosphere
Ecology
Microbiota
P34 - Biologie du sol
Macroecological patterns
[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics
15. Life on land
Plants
rizosphere microbiomes
macroecological patterns
rhizoshere soil microbes
holobionts
Data availability
030104 developmental biology
Rhizosphère
international
Micro-organisme du sol
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
010606 plant biology & botany
Zdroj: Trends in Plant Science
Trends in Plant Science, Elsevier, 2020, 25 (10), pp.1017-1029. ⟨10.1016/j.tplants.2020.04.015⟩
Trends in Plant Science, 25(10), 1017-1029. Elsevier B.V.
Trends in Plant Science, 2020, 25 (10), pp.1017-1029. ⟨10.1016/j.tplants.2020.04.015⟩
ISSN: 1360-1385
Popis: It is generally accepted that plants locally influence the composition and activity of their rhizosphere microbiome, and that rhizosphere community assembly further involves a hierarchy of constraints with varying strengths across spatial and temporal scales. However, our knowledge of rhizosphere microbiomes is largely based on single-location and time-point studies. Consequently, it remains difficult to predict patterns at large landscape scales, and we lack a clear understanding of how the rhizosphere microbiome forms and is maintained by drivers beyond the influence of the plant. By synthesizing recent literature and collating data on rhizosphere microbiomes, we point out the opportunities and challenges offered by advances in molecular biology, bioinformatics, and data availability. Specifically, we highlight the use of exact sequence variants, coupled with existing and newly generated data to decipher the rules of rhizosphere community assembly across large spatial and taxonomic scales. published
Databáze: OpenAIRE
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