Anal. Chem

Autor: Iacobucci, Claudio, Piotrowski, Christine, Aebersold, Ruedi, Amaral, Bruno C, Andrews, Philip C, Bernfur, Katja, Borchers, Christoph H, Brodie, Nicholas I, Bruce, James E, Cao, Yong, Chaignepain, Stéphane, Chavez, Juan D, Claverol, Stéphane, Cox, Jurgen, Davis, Trisha N, Degliesposti, Gianluca, Dong, Meng-Qiu, Edinger, Nufar, Emanuelsson, Cecilia, Gay, Marina, Götze, Michael, Gomes-Neto, Francisco, Gozzo, Fabio Cesar, Gutierrez, Craig B, Haupt, Caroline, Heck, Albert J R, Herzog, Frank, Huang, Lan, Hoopmann, Michael R, Kalisman, Nir, Klykov, Oleg, Kukačka, Zdeněk, Liu, Fan, MacCoss, Michael J, Mechtler, Karl, Mesika, Ravit, Moritz, Robert L, Nagaraj, Nagarjuna, Nesati, Victor, Neves-Fereira, Ana G C, Ninnis, Robert, Novák, Petr, O'Reilly, Francis J, Pelzing, Matthias, Petrotchenko, Evgeniy V, Piersimoni, Lolita, Plasencia, Manolo, Pukala, Tara L, Rand, Kasper D, Rappsilber, Juri, Reichman, Dana, Sailer, Carolin, Sarnowski, Chris P, Scheltema, Richard A, Schmidt, Carla, Schriemer, David C, Shi, Yi, Skehel, J Mark, Slavin, Moriya, Sobott, Frank, Solis-Mezarino, Victor, Stephanowitz, Heike, Stengel, Florian, Stieger, Christian E, Trabjerg, Esben, Trnka, Michael J, Vilaseca, Marta, Viner, Rosa, Xiang, Yufei, Yılmaz, Şule, Zelter, Alex, Ziemianowicz, Daniel S, Leitner, Alexander, Sinz, Andrea, Afd Biomol.Mass Spect. and Proteomics, Sub Biomol.Mass Spectrometry & Proteom., Biomolecular Mass Spectrometry and Proteomics
Přispěvatelé: Univ Bordeaux, CNRS UMR 5248, Inst Chim & Biol Membranes & Nanoobjets, INP Bordeaux, Université de Bordeaux (UB)-Institut Polytechnique de Bordeaux (Bordeaux INP)-Centre National de la Recherche Scientifique (CNRS), Plateforme Métabolome-Fluxome du Centre de Génomique Fonctionnelle de Bordeaux, Institut National de la Recherche Agronomique (INRA), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
Jazyk: angličtina
Rok vydání: 2019
Předmět:
Zdroj: Analytical chemistry
Analytical Chemistry, 91(11), 6953. American Chemical Society
Analytical chemistry, vol 91, iss 11
Analytical Chemistry
Analytical Chemistry, American Chemical Society, In press, 91 (11), pp.6953-6961. ⟨10.1021/acs.analchem.9b00658⟩
Iacobucci, C, Piotrowski, C, Aebersold, R, Amaral, B C, Andrews, P, Bernfur, K, Borchers, C, Brodie, N I, Bruce, J E, Cao, Y, Chaignepain, S, Chavez, J D, Claverol, S, Cox, J, Davis, T, Degliesposti, G, Dong, M Q, Edinger, N, Emanuelsson, C, Gay, M, Götze, M, Gomes-Neto, F, Gozzo, F C, Gutierrez, C, Haupt, C, Heck, A J R, Herzog, F, Huang, L, Hoopmann, M R, Kalisman, N, Klykov, O, Kukačka, Z, Liu, F, Maccoss, M J, Mechtler, K, Mesika, R, Moritz, R L, Nagaraj, N, Nesati, V, Neves-Ferreira, A G C, Ninnis, R, Novák, P, O'Reilly, F J, Pelzing, M, Petrotchenko, E, Piersimoni, L, Plasencia, M, Pukala, T, Rand, K D, Rappsilber, J, Reichmann, D, Sailer, C, Sarnowski, C P, Scheltema, R A, Schmidt, C, Schriemer, D C, Shi, Y, Skehel, J M, Slavin, M, Sobott, F, Solis-Mezarino, V, Stephanowitz, H, Stengel, F, Stieger, C E, Trabjerg, E, Trnka, M, Vilaseca, M, Viner, R, Xiang, Y, Yilmaz, S, Zelter, A, Ziemianowicz, D, Leitner, A & Sinz, A 2019, ' First community-wide, comparative cross-linking mass spectrometry study ', Analytical Chemistry, vol. 91, no. 11, pp. 6953-6961 . https://doi.org/10.1021/acs.analchem.9b00658
Iacobucci, C, Piotrowski, C, Aebersold, R, Amaral, B C, Andrews, P C, Bernfur, K, Borchers, C H, Brodie, N I, Bruce, J E, Cao, Y, Chaignepain, S, Chavez, J D, Claverol, S, Cox, J, Davis, T N, Degliesposti, G, Dong, M-Q, Edinger, N, Emanuelsson, C, Gay, M, Gomes-Neto, F, Gozzo, F C, Gutierrez, C B, Haupt, C, Heck, A J R, Herzog, F, Huang, L, Hoopmann, M R, Kalisman, N, Klykov, O, Kukačka, Z, Liu, F, MacCoss, M J, Mechtler, K, Mesika, R, Moritz, R L, Nagaraj, N, Nesati, V, Neves-Fereira, A G C, Ninnis, R, Novák, P, O'Reilly, F J, Pelzing, M, Petrotchenko, E V, Piersimoni, L, Plasencia, M, Pukala, T L, Rand, K D, Rappsilber, J, Reichman, D, Sailer, C, Sarnowski, C P, Scheltema, R A, Schmidt, C, Schriemer, D C, Shi, Y, Skehel, J M, Slavin, M, Sobott, F, Solis-Mezarino, V, Stephanowitz, H, Stengel, F, Stieger, C E, Trabjerg, E, Trnka, M J, Vilaseca, M, Viner, R, Xiang, Y, Yılmaz, Ş, Zelter, A, Ziemianowicz, D S, Leitner, A & Sinz, A 2019, ' The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study ', Analytical Chemistry, vol. 91, no. 11, pp. 6953-6961 . https://doi.org/10.1021/acs.analchem.9b00658
ISSN: 0003-2700
1520-6882
DOI: 10.1021/acs.analchem.9b00658⟩
Popis: The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein protein interactions has increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats. Such consensus formats should become accepted in the field and be shown to lead to reproducible results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. Our study therefore builds the framework for establishing best practice guidelines to conduct cross-linking experiments, perform data analysis, and define reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.
Databáze: OpenAIRE
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