WikiPathways: connecting communities
| Autor: | Martens, Marvin, Ammar, Ammar, Riutta, Anders, Waagmeester, Andra, Slenter, Denise N, Hanspers, Kristina, A. Miller, Ryan, Digles, Daniela, Lopes, Elisson N, Ehrhart, Friederike, Dupuis, Lauren J, Winckers, Laurent A, Coort, Susan L, Willighagen, Egon L, Evelo, Chris T, Pico, Alexander R, Kutmon, Martina |
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| Přispěvatelé: | Bioinformatica, RS: NUTRIM - R1 - Obesity, diabetes and cardiovascular health, RS: NUTRIM - R3 - Respiratory & Age-related Health, RS: FHML MaCSBio, Maastricht Centre for Systems Biology, RS: FSE MaCSBio, RS: FPN MaCSBio |
| Jazyk: | angličtina |
| Rok vydání: | 2021 |
| Předmět: |
0303 health sciences
Open science 2019-20 coronavirus outbreak Databases Factual Coronavirus disease 2019 (COVID-19) AcademicSubjects/SCI00010 WikiPathways : Pathways for the people Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Pathway database Publications SET ENRICHMENT ANALYSIS COVID-19 Biology FRAMEWORK World Wide Web User-Computer Interface 03 medical and health sciences 0302 clinical medicine Genetics Humans Database Issue Data Curation 030217 neurology & neurosurgery 030304 developmental biology |
| Zdroj: | Nucleic Acids Research, 49(D1), D613-D621. Oxford University Press Nucleic Acids Research |
| ISSN: | 0305-1048 |
| Popis: | WikiPathways (https://www.wikipathways.org) is a biological pathway database known for its collaborative nature and open science approaches. With the core idea of the scientific community developing and curating biological knowledge in pathway models, WikiPathways lowers all barriers for accessing and using its content. Increasingly more content creators, initiatives, projects and tools have started using WikiPathways. Central in this growth and increased use of WikiPathways are the various communities that focus on particular subsets of molecular pathways such as for rare diseases and lipid metabolism. Knowledge from published pathway figures helps prioritize pathway development, using optical character and named entity recognition. We show the growth of WikiPathways over the last three years, highlight the new communities and collaborations of pathway authors and curators, and describe various technologies to connect to external resources and initiatives. The road toward a sustainable, community-driven pathway database goes through integration with other resources such as Wikidata and allowing more use, curation and redistribution of WikiPathways content. Graphical Abstract Graphical AbstractWikiPathways enables research communities to collaborate on molecular pathway curation to create reusable, machine-readable pathway models. The pathway collections are freely available and integrated with many analysis tools and resources. |
| Databáze: | OpenAIRE |
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