Molecular variability of oat based on gene specific markers
| Autor: | Želmíra Balážová, Martin Vivodík, Radomíra Hornyák Gregáňová, Zdenka Gálová, Lenka Petrovičová |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
0106 biological sciences
0301 basic medicine food.ingredient dendrogramiversity polymorphism dendrogram lcsh:TX341-641 Biology 01 natural sciences polymorphism SCoT technique 03 medical and health sciences Diversity index food Polymorphism (computer science) Genotype Avena sativa L Genetic variability Genetics Genetic diversity Dendrogram UPGMA food and beverages genetic diversity 030104 developmental biology Avena lcsh:Nutrition. Foods and food supply 010606 plant biology & botany Food Science |
| Zdroj: | Potravinarstvo, Vol 11, Iss 1, Pp 332-337 (2017) |
| ISSN: | 1337-0960 |
| Popis: | Oat (Avena sativa L.) is agrass planted as acereal crop. Cultivation of oat is increasing in the recent years because of its good nutrition value. The aim of our study was to analyze genetic variability of oat accessions based on SCoT markers. Eighteen primers were used to study polymorfism of 8 oat genotypes. All 18 primers produced polymorphic and reproducible data. Altogether 153 different fragments were amplified of which 67 were polymorphic with an average number of 3.72 polymorphic fragments per genotype. The number of polymorphic fragments ranged from one (SCoT9, SCoT62) to nine (SCoT40). The percentage of polymorphic bands ranged from 14.29% (SCoT9) to 60% (SCoT59) with an average of 41.62%. Genetic polymorphism was characterized based on diversity index (DI), probability of identity (PI) and polymorphic information content (PIC). The diversity index of the tested SCoT markers ranged from 0 (SCoT9, SCoT62) to 0.878 (SCoT40) with an average of 0.574. The polymorphic information content ranged from 0 (SCoT9, SCoT62) to 0.876 (SCoT40) with an average of 0.524. Dendrogram based on hierarchical cluster analysis using UPGMA algorithm grouped genotypes into two main clusters. Two genotypes, Taiko and Vok were genetically the closest. Results showed the utility of SCoT markers for estimation of genetic diversity of oat genotypes leading to genotype identification. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|