High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing
| Autor: | Jonathan M. Jacobs, Janet Ziegle, Emily K Luna, Christine Chang, Ralf Koebnik, Stephen P. Cohen, Jillian M. Lang, Perrine Portier, Marion Fischer Le-Saux, Jan E. Leach |
|---|---|
| Přispěvatelé: | Department of Plant Pathology, Ohio State University [Columbus] (OSU), Colorado State University [Fort Collins] (CSU), Pacific Biosciences of California, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut de Recherche pour le Développement (IRD), The Ohio State University, United States Department of Agriculture National Institute of Food and Agriculture (NIFA) Postdoctoral Fellowship (2018-08122 to S. P. Cohen) and a joint National Science Foundation-NIFA PBI grant (2018-05040 to J. M. Lang, J. E. Leach, and J. M. Jacobs). European Cooperation in Science and Technology (COST) Action CA16107 EuroXanth, Fulbright Scholar Award to Belgium (J. M. Jacobs)., Université d'Angers (UA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro) |
| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
Hyacinthus
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences Plant Science SMRT sequencing Xanthomonas hyacinthi Genome 03 medical and health sciences 0302 clinical medicine Xanthomonas [SDV.BV]Life Sciences [q-bio]/Vegetal Biology 030304 developmental biology Genetics Whole genome sequencing 0303 health sciences xanthomonas hyacinthi biology Contig Strain (biology) food and beverages yellow disease biology.organism_classification [SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy hyacinth [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology Agronomy and Crop Science 030217 neurology & neurosurgery Single molecule real time sequencing |
| Zdroj: | Plant Disease Plant Disease, American Phytopathological Society, 2020, pp.PDIS-11-19-2393. ⟨10.1094/PDIS-11-19-2393-A⟩ Plant Disease, 2020, pp.PDIS-11-19-2393. ⟨10.1094/PDIS-11-19-2393-A⟩ |
| ISSN: | 0191-2917 |
| DOI: | 10.1094/PDIS-11-19-2393-A⟩ |
| Popis: | International audience; The bacterial plant pathogen Xanthomonas hyacinthi is the causal agent of yellow disease of Hyacinthus and other ornamental plant genera. There is no available complete genome for X. hyacinthi, limiting basic research for this pathogen. Here, we release a high-quality complete genome sequence for the X. hyacinthi type strain, CFBP 1156. Single-molecule real-time (SMRT) sequencing with a mean coverage of 306× revealed two contigs of 4,918,645 and 44,381 bp in size. This was the first characterized plant-disease-causing species of Xanthomonas and this genome provides a resource to better understand the biology of yellow disease of hyacinth. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|