Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads

Autor: Tristan Lefébure, Adeline Dumet, Nathalie Mondy, Philippe Veber, Claude Duchamp, Jean Secondi, Vincent Navratil, Thierry Lengagne, Lara Konecny-Dupré, Morgane Touzot
Přispěvatelé: Équipe 4 - Écophysiologie, Comportement, Conservation (E2C), Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés (LEHNA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École Nationale des Travaux Publics de l'État (ENTPE)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École Nationale des Travaux Publics de l'État (ENTPE)-Centre National de la Recherche Scientifique (CNRS), Équipe 3 - Écologie, Évolution, Écosystemes Souterrains (E3S), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Pôle Rhône-Alpin de BioInformatique [Lyon] (PRABI), Université de Lyon-Université de Lyon, Institut Français de Bioinformatique (IFB-CORE), Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), ANR-10-LABX-0088,IMU,Urban Worlds Intelligences(2010), ANR-16-IDEX-0005,IDEXLYON,IDEXLYON(2016), ANR-17-EURE-0018,H2O'LYON,School of Integrated Watershed Sciences(2017), Lyvet, Nathalie, Urban Worlds Intelligences - - IMU2010 - ANR-10-LABX-0088 - LABX - VALID, IDEXLYON - - IDEXLYON2016 - ANR-16-IDEX-0005 - IDEX - VALID, School of Integrated Watershed Sciences - - H2O'LYON2017 - ANR-17-EURE-0018 - EURE - VALID, Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.)-Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés (LEHNA), Institut Français de Bioinformatique - UMS CNRS 3601 (IFB-CORE), Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)
Jazyk: angličtina
Rok vydání: 2022
Předmět:
Zdroj: Science of the Total Environment
Science of the Total Environment, 2022, 818, pp.151734. ⟨10.1016/j.scitotenv.2021.151734⟩
Science of the Total Environment, Elsevier, In press, pp.151734. ⟨10.1016/j.scitotenv.2021.151734⟩
ISSN: 0048-9697
1879-1026
Popis: International audience; Artificial light at night (ALAN) affects numerous physiological and behavioural mechanisms in various species by po- tentially disturbing circadian timekeeping systems and modifying melatonin levels. However, given the multiple direct and indirect effects of ALAN on organisms, large-scale transcriptomic approaches are essential to assess the global ef- fect of ALAN on biological processes. Moreover, although studies have focused mainly on variations in gene expression during the night in the presence of ALAN, it is necessary to investigate the effect of ALAN on gene expression during the day. In this study, we combined de novo transcriptome sequencing and assembly, and a controlled laboratory experi- ment to evaluate the transcriptome-wide gene expression response using high-throughput (RNA-seq) in Bufo bufo tad- poles exposed to ecologically relevant light levels. Here, we demonstrated for the first time that ALAN affected gene expression at night (3.5% and 11% of differentially expressed genes when exposed to 0.1 and 5 lx compared to con- trols, respectively), but also during the day (11.2% of differentially expressed genes when exposed to 5 lx compared to controls) with a dose-dependent effect. ALAN globally induced a downregulation of genes (during the night, 58% and 62% of the genes were downregulated when exposed to 0.1 and 5 lx compared to controls, respectively, and dur- ing the day, 61.2% of the genes were downregulated when exposed to 5 lx compared to controls). ALAN effects were detected at very low levels of illuminance (0.1 lx) and affected mainly genes related to the innate immune system and, to a lesser extend to lipid metabolism. These results provide new insights into understanding the effects of ALAN on organism. ALAN impacted the expression of genes linked to a broad range of physiological pathways at very low levels of ALAN during night-time and during daytime, potentially resulting in reduced immune capacity under environmen- tal immune challenges.
Databáze: OpenAIRE
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