The nucleotide sequence of satellite RNA in grapevine fanleaf virus, strain F13
| Autor: | Monique Pinck, M. A. Serghini, Marc Fuchs, Bernard Walter, M. Ravelonandro, L. Pinck |
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| Přispěvatelé: | Station de recherches vigne et vin : Laboratoire de pathologie végétale, Institut National de la Recherche Agronomique (INRA), Unité mixte de recherche santé végétale, Institut National de la Recherche Agronomique (INRA)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB), ProdInra, Migration |
| Jazyk: | angličtina |
| Rok vydání: | 1989 |
| Předmět: |
Picornavirus
Molecular Sequence Data Restriction Mapping Plant Viruses Viral Proteins 03 medical and health sciences Sequence Homology Nucleic Acid Virology Consensus sequence Coding region Amino Acid Sequence ComputingMilieux_MISCELLANEOUS 030304 developmental biology [SDV.MP.VIR] Life Sciences [q-bio]/Microbiology and Parasitology/Virology Genetics 0303 health sciences Base Sequence biology 030306 microbiology Nucleic acid sequence Nucleic Acid Hybridization RNA Grapevine fanleaf virus BIOLOGIE MOLECULAIRE biology.organism_classification Tomato black ring virus VIROLOGIE [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology Nepovirus RNA Satellite RNA Viral |
| Zdroj: | Journal of General Virology Journal of General Virology, Microbiology Society, 1989, 70 (0022-1317), pp.955-962 |
| ISSN: | 0022-1317 1465-2099 |
| Popis: | Summary The nucleotide sequence of cDNA copies of grapevine fanleaf virus (strain F13) satellite RNA has been determined. The primary structure obtained was 1114 nucleotides in length, excluding the poly(A) tail, and contained only one long open reading frame encoding a 341 residue, highly hydrophilic polypeptide of M r 37275. The coding sequence was bordered by a leader of 14 nucleotides and a 3′-terminal noncoding region of 74 nucleotides. No homology has been found with small satellite RNAs associated with other nepoviruses. Two limited homologies of eight nucleotides have been detected between the satellite RNA in grapevine fanleaf virus and those in tomato black ring virus, and a consensus sequence U.G/UGAAAAU/AU/AU/A at the 5′ end of nepovirus RNAs is reported. A less extended consensus exists in this region in comovirus and picornavirus RNA. |
| Databáze: | OpenAIRE |
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