Additional file 2 of Genotype-by-environment interactions for reproduction, body composition, and growth traits in maternal-line pigs based on single-step genomic reaction norms

Autor: Chen, Shi-Yi, Freitas, Pedro H. F., Oliveira, Hinayah R., Lázaro, Sirlene F., Huang, Yi Jian, Howard, Jeremy T., Gu, Youping, Schinckel, Allan P., Brito, Luiz F.
Rok vydání: 2021
DOI: 10.6084/m9.figshare.14803886.v1
Popis: Additional file 2: Fig. S1. Density distribution of the estimated effects of contemporary groups. Fig. S2. Genetic correlations across environmental gradients using the optimal reaction norm models for the four traits without G × E interaction. Fig. S3. Heritability estimates using reaction norm models with homogenous (RNM1) and heterogeneous (RNM2) residual variances for the four traits without G × E interaction. Fig. S4. Genomic estimated breeding values using the optimal reaction norm models for 20 sires with the highest and lowest reaction norm slopes, respectively (for the four traits without G × E interaction). Fig. S5. Miami plots for the proportion of explained variance by 5-SNP sliding genomic windows for the four traits without clear G × E interaction. Fig. S6. Biological processes involved for all candidate genes identified in this study. Fig. S7. Five enriched terms of Human Phenotype Ontology for the number of piglets born alive (NBA). Fig. S8. Heritability estimates for the total number of piglets born (TNB) and number of piglets born alive (NBA) across environmental gradients using three scenarios regarding the X-chromosome markers.
Databáze: OpenAIRE