An MTF1 binding site disrupted by a homozygous variant in the promoter of ATP7B likely causes Wilson Disease
| Autor: | Gill Bejerano, Jonathan A. Bernstein, Karthik A. Jagadeesh, Heidi I Chen, Harendra Guturu, Susan Schelley, Johannes Birgmeier, Aaron M. Wenger |
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| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
Male medicine.medical_specialty Biology medicine.disease_cause Article 03 medical and health sciences symbols.namesake Exon 0302 clinical medicine Hepatolenticular Degeneration Genetics medicine Humans splice Promoter Regions Genetic Gene Transcription factor Genetics (clinical) Mutation Binding Sites Homozygote Hep G2 Cells DNA-Binding Proteins 030104 developmental biology Copper-Transporting ATPases Child Preschool Mendelian inheritance symbols Medical genetics Human genome 030217 neurology & neurosurgery Protein Binding Transcription Factors |
| Popis: | Approximately 2% of the human genome accounts for protein-coding genes, yet most known Mendelian disease-causing variants lie in exons or splice sites. Individuals who symptomatically present with monogenic disorders but do not possess function-altering variants in the protein-coding regions of causative genes may harbor variants in the surrounding gene regulatory domains. We present such a case: a male of Afghani descent was clinically diagnosed with Wilson Disease—a disorder of systemic copper buildup—but was found to have no function-altering coding variants in ATP7B (ENST00000242839.4), the typically causative gene. Our analysis revealed the homozygous variant chr13:g.52,586,149T>C (NC_000013.10, hg19) 676 bp into the ATP7B promoter, which disrupts a metal regulatory transcription factor 1 (MTF1) binding site and diminishes expression of ATP7B in response to copper intake, likely resulting in Wilson Disease. Our approach to identify the causative variant can be generalized to systematically discover function-altering non-coding variants underlying disease and motivates evaluation of gene regulatory variants. |
| Databáze: | OpenAIRE |
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