Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
| Autor: | Yannick Colin, M.-P. Turpault, Jizhong Zhou, Stéphane Uroz, J. D. Van Nostrand, O. Nicolitch |
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| Přispěvatelé: | Interactions Arbres-Microorganismes (IAM), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), University of Oklahoma (OU), Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Tsinghua University [Beijing] (THU), Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF), Institut National de la Recherche Agronomique (INRA), ANR (ANR-11-LABX-0002-01, ANR-11-JSV7-0001, ANR-11-LABX-0002-01), Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Tsinghua University [Beijing] |
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
0301 basic medicine
Secondary Metabolism lcsh:Medicine microbiome facteur édaphique RNA Ribosomal 16S relation plante-microorganisme species richness arbre forestier feuillu lcsh:Science Soil Microbiology 2. Zero hunger Rhizosphere Multidisciplinary biology Ecology Microbiota Soil classification Soil type Other Physical Sciences [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology diversité spécifique rhizosphère richesse spécifique 16S 030106 microbiology [SDU.STU]Sciences of the Universe [physics]/Earth Sciences Context (language use) plant - microorganism relationship fagus sylvatica Article 03 medical and health sciences Fagus sylvatica european beech Botany Microbiome Beech Ribosomal lcsh:R toposéquence 15. Life on land biology.organism_classification Carbon 030104 developmental biology élément nutritif du sol Soil water séquence d'arn RNA Metagenome Microbial Interactions lcsh:Q Metagenomics Biochemistry and Cell Biology |
| Zdroj: | Scientific Reports Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩ Scientific Reports, Vol 7, Iss 1, Pp 1-17 (2017) Scientific reports, vol 7, iss 1 |
| ISSN: | 2045-2322 |
| DOI: | 10.1038/s41598-017-07639-1⟩ |
| Popis: | It has been rarely questioned as to whether the enrichment of specific bacterial taxa found in the rhizosphere of a given plant species changes with different soil types under field conditions and under similar climatic conditions. Understanding tree microbiome interactions is essential because, in contrast to annual plants, tree species require decades to grow and strongly depend on the nutritive resources of the soil. In this context, we tested using a natural toposequence the hypothesis that beech trees select specific taxa and functions in their rhizosphere based on the soil conditions and their nutritive requirements. Our 16S rRNA gene pyrosequencing analyses revealed that the soil type determines the taxa colonizing the beech rhizosphere. A rhizosphere effect was observed in each soil type, but a stronger effect was observed in the nutrient-poor soils. Although the communities varied significantly across the toposequence, we identified a core beech rhizosphere microbiome. Functionally, GeoChip analyses showed a functional redundancy across the toposequence, with genes related to nutrient cycling and to the bacterial immune system being significantly enriched in the rhizosphere. Altogether, the data suggest that, regardless of the soil conditions, trees enrich variable bacterial communities to maintain the functions necessary for their nutrition. |
| Databáze: | OpenAIRE |
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