Construction of a cytogenetically anchored microsatellite map in rabbit
Autor: | Céline Urien, Daniel Vaiman, Patrick Chardon, Hélène Hayes, Céline Chantry-Darmon, Sead Taourit, Maud Bertaud, Claire Gaillard |
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Přispěvatelé: | Unité de recherche Virologie et Immunologie Moléculaires (VIM (UR 0892)), Institut National de la Recherche Agronomique (INRA), Unité de recherche Génétique Biochimique et Cytogénétique (LGBC), Laboratoire de radiobiologie et d'étude du génome (LREG), Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Recherche Agronomique (INRA) |
Jazyk: | angličtina |
Rok vydání: | 2005 |
Předmět: |
0106 biological sciences
Sequence Homology Biology Quantitative trait locus 010603 evolutionary biology 01 natural sciences Genome 03 medical and health sciences Cytogenetics Plasmid Genetics medicine Animals Humans Genomic library In Situ Hybridization Fluorescence 030304 developmental biology 0303 health sciences Bacterial artificial chromosome [SDV.GEN]Life Sciences [q-bio]/Genetics medicine.diagnostic_test Chromosome Mapping Chromosome Banding Microsatellite Rabbits Chromosome 21 Fluorescence in situ hybridization Microsatellite Repeats |
Zdroj: | Mammalian Genome Mammalian Genome, Springer Verlag, 2005, 16, pp.442-459. ⟨10.1007/s00335-005-2471-z⟩ Mammalian Genome, 2005, 16, pp.442-459. ⟨10.1007/s00335-005-2471-z⟩ |
ISSN: | 0938-8990 1432-1777 |
DOI: | 10.1007/s00335-005-2471-z⟩ |
Popis: | International audience; Rabbit (Oryctolagus cuniculus) represents a valuable source of biomedical models and corresponds to a small but active economic sector in Europe for meat and fur. The rabbit genome has not been thoroughly studied until recently, and high-resolution maps necessary for identification of genes and quantitative trait loci (QTL) are not yet available. Our aim was to isolate over 300 new and regularly distributed (TG)n or (TC)n rabbit microsatellites. To achieve this purpose, 164 microsatellite sequences were isolated from gene-containing bacterial artificial chromosome (BAC) clones previously localized by fluorescence in situ hybridization (FISH) on all the rabbit chromosomes. In addition, 141 microsatellite sequences were subcloned from a plasmid genomic library, and for 41 of these sequences, BAC clones were identified and FISH-mapped. TC repeats were present in 62% of the microsatellites derived from gene-containing BAC clones and in 22% of those from the plasmid genomic library, with an average of 42.9% irrespective of the microsatellite origin. These results suggest a higher proportion of (TC)n repeats and a nonhomogeneous distribution of (TG)n and (TC)n repeats in the rabbit genome compared to those in man. Among the 305 isolated microsatellites, 177 were assigned to 139 different cytogenetic positions on all the chromosomes except rabbit Chromosome 21. Sequence similarity searches provided hit locations on the Human Build 35a and hypothetical assignments on rabbit chromosomes for ten additional microsatellites. Taken together, these results report a reservoir of 305 new rabbit microsatellites of which 60% have a cytogenetic position. This is the first step toward the construction of an integrated cytogenetic and genetic map based on microsatellites homogeneously anchored to the rabbit genome. |
Databáze: | OpenAIRE |
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