Social Mixing and Clinical Features Linked With Transmission in a Network of Extensively Drug-resistant Tuberculosis Cases in KwaZulu-Natal, South Africa

Autor: Sara C. Auld, Kristin N. Nelson, Koleka Mlisana, Samuel M. Jenness, Pravi Moodley, Salim Allana, Benjamin A. Lopman, Barun Mathema, Shaheed V. Omar, N. Sarita Shah, James C.M. Brust, Nazir Ahmed Ismail, Tyler S. Brown, Angie Campbell, Neel R. Gandhi
Jazyk: angličtina
Rok vydání: 2019
Předmět:
Zdroj: Clin Infect Dis
Popis: Background Tuberculosis (TB) is the leading infectious cause of death globally, and drug-resistant TB strains pose a serious threat to controlling the global TB epidemic. The clinical features, locations, and social factors driving transmission in settings with high incidences of drug-resistant TB are poorly understood. Methods We measured a network of genomic links using Mycobacterium tuberculosis whole-genome sequences. Results Patients with 2–3 months of cough or who spent time in urban locations were more likely to be linked in the network, while patients with sputum smear–positive disease were less likely to be linked than those with smear-negative disease. Associations persisted using different thresholds to define genomic links and irrespective of assumptions about the direction of transmission. Conclusions Identifying factors that lead to many transmissions, including contact with urban areas, can suggest settings instrumental in transmission and indicate optimal locations and groups to target with interventions.
Databáze: OpenAIRE