Draft Genome Resources of Two Strains ('ESVL' and 'IVIA5901') of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain
| Autor: | Maria Saponari, Ester Marco-Noales, Inmaculada Navarro, Blanca B. Landa, Pasquale Saldarelli, Rodrigo P. P. Almeida, Miguel Montes-Borrego, Miguel Román-Écija, María Pilar Velasco-Amo, Donato Boscia, Annalisa Giampetruzzi, Silvia Barbé, Vito Nicola Savino, Vito Montilon, Adela Monterde |
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| Přispěvatelé: | European Commission, European Cooperation in Science and Technology, Ministerio de Ciencia, Innovación y Universidades (España), National Institutes of Health (US) |
| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
0301 basic medicine Sequence analysis Genomics Plant Science Subspecies leaf scorch Xylella 01 natural sciences Genome DNA sequencing 03 medical and health sciences Phylogenetics Phylogeny Plant Diseases Xylella fastidiosa 2. Zero hunger Genetics biology Phylogenetic tree Sequence Analysis DNA biology.organism_classification Prunus dulcis Europe 030104 developmental biology Spain Agronomy and Crop Science 010606 plant biology & botany |
| Zdroj: | Digital.CSIC. Repositorio Institucional del CSIC instname Phytopathology electronico ReDivia. Repositorio Digital del Instituto Valenciano de Investigaciones Agrarias Phytopathology 109 (2019): 219–221. doi:10.1094/PHYTO-09-18-0328-A info:cnr-pdr/source/autori:Giampetruzzi A., Velasco-Amo M.P., Marco-Noales E., Montes-Borrego M., Roman-Ecija M., Navarro I., Monterde A., Barbe S., Almeida R.P.P., Saldarelli P., Saponari M., Montilon V., Savino V.N., Boscia D., Landa B.B./titolo:Draft genome resources of two strains ("ESVL" and "IVIA5901") of xylella fastidiosa associated with almond leaf scorch disease in alicante, Spain/doi:10.1094%2FPHYTO-09-18-0328-A/rivista:Phytopathology/anno:2019/pagina_da:219/pagina_a:221/intervallo_pagine:219–221/volume:109 |
| Popis: | An outbreak of Xylella fastidiosa subsp. multiplex sequence type ST6 was discovered in 2017 in mainland Spain affecting almond trees. Two cultured almond strains, “ESVL” and “IVIA5901,” were subjected to high throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively indicated they belong to the subspecies multiplex, and pairwise comparisons of the chromosomal genomes showed an average nucleotide identity higher than 99%. Interestingly, the two strains differ for the presence of the plasmids pXF64-Hb_ESVL and pUCLA-ESVL detected only in the ESVL strain. The availability of these draft genomes contribute to extend the European genomic sequence dataset, a first step toward setting new research to elucidate the pathway of introduction and spread of the numerous strains of this subspecies so far detected in Europe. This work was funded by European Union’s Horizon 2020 Framework Research Programme Projects XF-ACTORS (Xylella fastidiosa Active Containment Through a Multidisciplinary-Oriented Research Strategy grant 727987) and MSCA-RISE-2016 CURE-XF (Capacity Building and Raising Awareness in Europe and in Third Countries to Cope with Xylella fastidiosa); COST Action CA16107 EuroXanth, supported by European Cooperation in Science and Technology; and Project Desarrollo de estrategias de erradicación, contención y control de en España: Diagnóstico, estructura genética y gama de huéspedes project E-RTA2017-00004-C06-02 from Programa Estatal de I+D+I Orientada a los Retos de la Sociedad of the Spanish Government. This work used the Vincent J. Coates Genomics Sequencing Laboratory at University of California, Berkeley, supported by NIH S10 OD018174 Instrumentation Grant. |
| Databáze: | OpenAIRE |
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