| Autor: |
Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy |
| Rok vydání: |
2021 |
| DOI: |
10.6084/m9.figshare.14176115.v1 |
| Popis: |
Additional file 5: Fig. S3. Whole genome phylogenetic analysis informed by recombination with added outgroup. Phylogenetic tree of a whole genome sequence MAFFT alignment of the C. abortus (Cab) and C. psittaci (Cps) strains shown in Table 2 as derived by Gubbins after removing genomic regions affected by recombination. Genotypes are given in square brackets. The sequence of C. pecorum W73 was additionally provided as outgroup. FastTree was used as tree builder, and a maximum of 100 iterations was specified in order to guarantee convergence. Tree was midpoint rooted and prepared using Dendroscope. Strain 84/2334 is in bold and red font. Classical and avian C. abortus strains are in blue and green fonts, respectively. |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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