Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode
| Autor: | Sebastian Kiewnick, Martine Da Rocha, Abdelnaser Elashry, Juerg E. Frey, Djampa K. L. Kozlowski, Cristina Martin-Jimenez, Etienne Danchin, Georgios Koutsovoulos, Christian H. Ahrens, Laetitia Perfus-Barbeoch, Erika Sallet, Marine Poullet |
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| Přispěvatelé: | Institut Sophia Agrobiotech (ISA), Université Nice Sophia Antipolis (1965 - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Côte d'Azur (UCA), Strube Research GmbH & Co. KG, Laboratoire des Interactions Plantes Microbes Environnement (LIPME), Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Agroscope, Julius Kühn-Institut (JKI), ANR-13-JSV7-0006,ASEXEVOL,Un génome fait de multiples copies divergentes permet-il à un animal parasite de plantes d'évoluer en l'absence de reproduction sexuée ?(2013), European Project: 609398,EC:FP7:PEOPLE,FP7-PEOPLE-2013-COFUND,AGREENSKILLSPLUS(2014), Université Nice Sophia Antipolis (... - 2019) (UNS) |
| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
Transposable element Statistics and Probability Data Descriptor [SDV]Life Sciences [q-bio] Meloidogyne Enterolobii Sequence assembly Biology Library and Information Sciences Genome informatics 01 natural sciences Genome Education 03 medical and health sciences Animals Root-knot nematode Tylenchoidea lcsh:Science Author Correction Gene Genome size Plant Diseases 030304 developmental biology 2. Zero hunger Genome Helminth 0303 health sciences Contig Comparative genomics Root-knot Nematodes fungi food and beverages biology.organism_classification Computer Science Applications Europe Meloidogyne enterolobii Evolutionary biology lcsh:Q Pathogens Statistics Probability and Uncertainty 010606 plant biology & botany Information Systems |
| Zdroj: | Scientific Data Scientific Data, 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩ Scientific Data, Vol 7, Iss 1, Pp 1-13 (2020) Scientific Data, Nature Publishing Group, 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩ |
| ISSN: | 2052-4463 |
| DOI: | 10.1038/s41597-020-00666-0 |
| Popis: | Root-knot nematodes (genus Meloidogyne) are plant parasites causing huge economic loss in the agricultural industry and affecting severely numerous developing countries. Control methods against these plant pests are sparse, the preferred one being the deployment of plant cultivars bearing resistance genes against Meloidogyne species. However, M. enterolobii is not controlled by the resistance genes deployed in the crop plants cultivated in Europe. The recent identification of this species in Europe is thus a major concern. Here, we sequenced the genome of M. enterolobii using short and long-read technologies. The genome assembly spans 240 Mbp with contig N50 size of 143 kbp, enabling high-quality annotations of 59,773 coding genes, 4,068 non-coding genes, and 10,944 transposable elements (spanning 8.7% of the genome). We validated the genome size by flow cytometry and the structure, quality and completeness by bioinformatics metrics. This ensemble of resources will fuel future projects aiming at pinpointing the genome singularities, the origin, diversity, and adaptive potential of this emerging plant pest. Measurement(s) genome • sequence_assembly • sequence feature annotation Technology Type(s) DNA sequencing assay • sequence assembly process • sequence annotation Sample Characteristic - Organism Meloidogyne enterolobii Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12410363 |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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