Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing
| Autor: | Renhui Li, Bing-Chuan Zhu, Hua Li, Zuhong Lu, De-Min Cao, Junyi Zhang, Rui Guan, Hu-Jun Zhang, Gongliang Yu, Lei Du, Peng Xiao |
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| Jazyk: | angličtina |
| Rok vydání: | 2016 |
| Předmět: |
0301 basic medicine
Genetics Whole genome sequencing Comparative genomics Genome evolution Microcystis biology Water bloom Strain (biology) Chromosome biology.organism_classification Genome 03 medical and health sciences 030104 developmental biology Plasmid Lake Taihu Extended Genome Report Third-generation sequencing Microcystis panniformis FACHB1757 |
| Zdroj: | Standards in Genomic Sciences |
| ISSN: | 1944-3277 |
| Popis: | The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2011. The whole genome was sequenced using PacBio RS II sequencer with 48-fold coverage. The complete genome sequence with no gaps contained a 5,686,839 bp chromosome and a 38,683 bp plasmid, which coded for 6,519 and 49 proteins, respectively. Comparison with strains of M. aeruginosa and some other water bloom-forming cyanobacterial species revealed large-scale structure rearrangement and length variation at the genome level along with 36 genomic islands annotated genome-wide, which demonstrates high plasticity of the M. panniformis FACHB1757 genome and reveals that Microcystis has a flexible genome evolution. Electronic supplementary material The online version of this article (doi:10.1186/s40793-016-0130-5) contains supplementary material, which is available to authorized users. |
| Databáze: | OpenAIRE |
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