Characterization and phylogenetic analysis of the complete chloroplast genome of Camellia chrysanthoides (Theaceae)

Autor:	Zhengqi Fan, Xinlei Li, Yupeng Wang, Jiyuan Li, Weixin Liu, Hengfu Yin
Rok vydání:	2021
Předmět:	Whole genome sequencing Genetics Phylogenetic tree Inverted repeat phylogenetic analysis Ribosomal RNA Biology Genome Camellia chrysanthoides chloroplast genome Molecular Biology Gene Mitogenome Announcement GC-content Research Article
Zdroj:	Mitochondrial DNA. Part B, Resources article-version (VoR) Version of Record
ISSN:	2380-2359
DOI:	10.1080/23802359.2021.1981788
Popis:	Camellia chrysanthoides H.T.Chang 1979 is an economic species for its high ornamental and medicinal values. In the present work, the complete chloroplast (cp) genome sequence of C. chrysanthoides was assembled and characterized using Illumina paired-end sequencing data. The total cp genome of C. chrysanthoides is 157,439 bp in size, consisting of a small single copy (SSC) and a large single copy (LSC) separated by a pair of inverted repeats (IRs) with 18,265 bp, 88,162 bp, and 25,506 bp, respectively. Further annotation revealed the cp genome encoded 124 genes, including 82 protein-coding genes, 34 tRNA genes, and eight rRNA genes, and the overall GC content of the cp genome is 37.31%. Phylogenetic analysis based on 80 protein-coding genes shows that C. chrysanthoidesis closely related to C. azalea in the genus Camellia.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a4851f006b72583aa428de974c3a6a6 https://doi.org/10.1080/23802359.2021.1981788 Zobrazit plný text záznamu