Implicit Solvation Using the Superposition Approximation (IS-SPA): An Implicit Treatment of the Nonpolar Component to Solvation for Simulating Molecular Aggregation
| Autor: | Peter T. Lake, Martin McCullagh |
|---|---|
| Rok vydání: | 2017 |
| Předmět: |
Quantitative Biology::Biomolecules
010304 chemical physics Chemistry Implicit solvation Solvation 010402 general chemistry 01 natural sciences 0104 chemical sciences Computer Science Applications Superposition principle Solvation shell Solvent models Computational chemistry Kirkwood approximation 0103 physical sciences Monte Carlo integration Statistical physics Physics::Chemical Physics Physical and Theoretical Chemistry Solubility |
| Zdroj: | Journal of chemical theory and computation. 13(12) |
| ISSN: | 1549-9626 |
| Popis: | Nonpolar solute-solvent interactions are the driving force for aggregation in important chemical and biological phenomena including protein folding, peptide self-assembly, and oil-water emulsion formation. Currently, the most accurate and computationally efficient description of these processes requires an explicit treatment of all solvent and solute atoms. Previous computationally feasible implicit solvent models, such as solute surface area approaches, are unsuccessful at capturing aggregation features including both structural and energetic trends while more theoretically rigorous approaches, such as Reference Interaction Site Model (RISM), are accurate but extremely computationally demanding. Our approach, denoted Implicit Solvation using the Superposition Approximation (IS-SPA), builds on previous theory utilizing the Kirkwood superposition approximation to approximate the mean force of the solvent from solute parameters. We introduce and verify a parabolic first solvation shell truncation of atomic solvation, fitting water distributions around a molecule, and a Monte Carlo integration of the mean solvent force. These extensions allow this method to be implemented as an efficient nonpolar implicit solvent model for molecular simulation. The approximations in IS-SPA are first explored and justified for the homodimerization of an array of different sized Lennard-Jones spheres. The accuracy and transferability of the approach are demonstrated by its ability to capture the position and relative energies of the desolvation barrier and free energy minimum of alkane homodimers. The model is then shown to reproduce the phase separation and solubility of cyclohexane and water. These promising results, coupled with 2 orders of magnitude speed-up for dilute systems as compared to explicit solvent simulations, demonstrate that IS-SPA is an appealing approach to boost the time- and length-scale of molecular aggregation simulations. |
| Databáze: | OpenAIRE |
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