A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
| Autor: | Youn-Il Park, Ji-Eun Kim, Bong-Woo Lee, Moon Nam, Sung-Hwan Jo, Jeong-Hee Lee, J. Choe |
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| Rok vydání: | 2017 |
| Předmět: |
0106 biological sciences
0301 basic medicine Genetic Markers Genomics Computational biology Biology Genes Plant 01 natural sciences Genome Polymorphism Single Nucleotide General Biochemistry Genetics and Molecular Biology 03 medical and health sciences Species Specificity SNP Plant breeding Gene Solanaceae Synteny food and beverages Plant Breeding 030104 developmental biology Database Tool Genetic marker Marker Discovery General Agricultural and Biological Sciences Databases Nucleic Acid 010606 plant biology & botany Information Systems |
| Zdroj: | Database: The Journal of Biological Databases and Curation |
| ISSN: | 1758-0463 |
| Popis: | It is necessary for molecular breeders to overcome the difficulties in applying abundant genomic information to crop breeding. Candidate orthologs would be discovered more efficiently in less-studied crops if the information gained from studies of related crops were used. We developed a comparative analysis tool and web-based genome viewer to identify orthologous genes based synteny as well as sequence similarity between tomato, pepper and potato. The tool has a step-by-step interface with multiple viewing levels to support the easy and accurate exploration of functional orthologs. Furthermore, it provides access to single nucleotide-polymorphism markers from the massive genetic resource pool in order to accelerate the development of molecular markers for candidate orthologs in the Solanaceae. This tool provides a bridge between genome data and breeding by supporting effective marker development, data utilization and communication. Database URL: http://tgsol.seeders.co.kr/scomp/ |
| Databáze: | OpenAIRE |
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