GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
| Autor: | Jana Voříšková, Camelia Algora, Lucia Žifčáková, Federica D'Alò, Tereza Michalová, Petr Baldrian, Lenka Meszárošová, Sarah Piché-Choquette, Karel Švec, Lukáš Vlk, Mayuko Jomura, Miroslav Kolařík, Jana Kvasničková, Tijana Martinović, Zander Rainier Human, Daniel Kumazawa Morais, Vendula Brabcová, Tereza Mašínová, Martina Štursová, Květa Bílohnědá, Lenka Michalčíková, Iñaki Odriozola, Barbara Doreen Bahnmann, Rubén López-Mondéjar, Sunil Mundra, Vojtěch Tláskal, Petr Kohout, Clémentine Lepinay, Tomáš Větrovský, Salvador Lladó, Diana Navrátilová, Michaela Urbanová, Sandra Awokunle Hollá |
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| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
Statistics and Probability Data Descriptor Biogeography Biology Library and Information Sciences computer.software_genre 01 natural sciences DNA barcoding DNA sequencing Ecosystem services Education 03 medical and health sciences DNA Barcoding Taxonomic Ecosystem udc:630*17 lcsh:Science Author Correction Fungal ecology database Soil Microbiology 030304 developmental biology 0303 health sciences Database glive Fungi High-Throughput Nucleotide Sequencing Plants metabarcoading Computer Science Applications Metadata Habitat baza podatkov lcsh:Q fungi Statistics Probability and Uncertainty computer Soil microbiology 010606 plant biology & botany Information Systems Mycobiome |
| Zdroj: | Scientific Data Scientific data, vol. 7, no. 228, 2020. Scientific Data, Vol 7, Iss 1, Pp 1-14 (2020) |
| ISSN: | 2052-4463 |
| Popis: | Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition, symbiotic associations with cultivated and wild plants and pathogenicity. The high importance of fungi in ecosystem processes contrasts with the incompleteness of our understanding of the patterns of fungal biogeography and the environmental factors that drive those patterns. To reduce this gap of knowledge, we collected and validated data published on the composition of soil fungal communities in terrestrial environments including soil and plant-associated habitats and made them publicly accessible through a user interface at https://globalfungi.com. The GlobalFungi database contains over 600 million observations of fungal sequences across > 17 000 samples with geographical locations and additional metadata contained in 178 original studies with millions of unique nucleotide sequences (sequence variants) of the fungal internal transcribed spacers (ITS) 1 and 2 representing fungal species and genera. The study represents the most comprehensive atlas of global fungal distribution, and it is framed in such a way that third-party data addition is possible. Measurement(s) internal_transcribed_spacer_region Technology Type(s) digital curation Factor Type(s) geographic location • sample type • biome • sampling year Sample Characteristic - Organism Fungi Sample Characteristic - Environment terrestrial biome Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12481946 |
| Databáze: | OpenAIRE |
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