Accuracy and comparison of two rapid multiplex PCR tests for gastroenteritis pathogens: a systematic review and meta-analysis
| Autor: | Chien-Chang Lee, Han-Ping Wu, Tzu-Yu Liu, Wan-Ting Hsu, Li-Jun Chang, Victor Su-Ortiz, Julia Ding, Bing Chen, K.W. Su, Szu-Ta Chen, Chun-Jen Hsiao |
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| Rok vydání: | 2021 |
| Předmět: |
Rotavirus
0301 basic medicine medicine.medical_specialty Ovid medline Head to head 030106 microbiology RC799-869 medicine.disease_cause Sensitivity and Specificity 03 medical and health sciences 0302 clinical medicine Internal medicine Multiplex polymerase chain reaction medicine Animals 030212 general & internal medicine medicine.diagnostic_test Receiver operating characteristic business.industry enteric infections Gastroenterology Diseases of the digestive system. Gastroenterology Gastroenteritis meta-analysis real time PCR Meta-analysis Immunoassay Viruses Gastrointestinal Infection business Multiplex Polymerase Chain Reaction Area under the roc curve |
| Zdroj: | BMJ Open Gastroenterology BMJ Open Gastroenterology, Vol 8, Iss 1 (2021) |
| ISSN: | 2054-4774 |
| Popis: | ObjectivesThe primary aim is to provide a summary of evidence for the diagnostic accuracies of multiplex PCR gastrointestinal (GI) panels—BioFire FilmArray and Luminex xTAG on the detection of gastroenteritis pathogens. The secondary aim is to compare the performance of these GI panels head to head.MethodsA comprehensive search up to 1 December 2019 was conducted on PubMed, Embase, Ovid Medline and Web of Science for studies that used FilmArray or Luminex xTAG Gastrointestinal Pathogen Panel (GPP) for diagnosis of acute gastroenteritis. A summary of diagnostic accuracies for the 16 pathogens were calculated by comparing the GI panels to the current gold standards (conventional standard microbiology techniques such as culture or PCR for bacteria, PCR or enzyme immunoassay (EIA) for viruses, microscopy or EIA for parasite). Hierarchical summary receiver operating characteristic (HSROC) curve analysis, pretest and post-test probabilities were used for estimating the pathogen detection performance.ResultsA total of 11 studies with 7085 stool samples were eligible for analysis. Multiplex PCRs demonstrated high diagnostic accuracy, with specificity ≧0.98 and area under the ROC curve (AUROC) ≧0.97 for all the pathogens except for Yersinia enterocolitica (AUROC 0.91). The FilmArray panel demonstrated a higher sensitivity than xTAG GPP for most of the pathogens with the exception of Rotavirus A (xTAG GPP and FilmArray were both 0.93).ConclusionsThis is the first meta-analysis that is a head-to-head comparison examining the performance of the novel multiplex PCR-based tests Luminex xTAG GPP and FilmArray GI panel in detecting each pathogen. Point estimates calculated from eligible studies showed that both GI panels are highly accurate and may provide important diagnostic information for early identification of gastroenteritis. In addition, although FilmArray has higher sensitivity and post-test probability than xTAG GPP for most of the pathogens, how this will translate to a clinical setting remains unclear. |
| Databáze: | OpenAIRE |
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