Chromosome-level genome assembly of golden pompano (Trachinotus ovatus) in the family Carangidae
| Autor: | Nan Zhang, Yan Zhang, Huayang Guo, Shigui Jiang, Dianchang Zhang, Liang Guo, Shang-Qi Li, Ke-Cheng Zhu, Jiong-Tang Li, Bao-Suo Liu |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2019 |
| Předmět: |
Statistics and Probability
Data Descriptor Sequence assembly Library and Information Sciences Biology Genome Chromosomes Education 03 medical and health sciences 0302 clinical medicine Animals DNA sequencing Transcriptomics lcsh:Science Genome size Trachinotus ovatus 030304 developmental biology Whole genome sequencing 0303 health sciences Contig Fishes Chromosome Mapping biology.organism_classification Computer Science Applications Evolutionary biology Carangidae Pompano lcsh:Q Statistics Probability and Uncertainty 030217 neurology & neurosurgery Information Systems |
| Zdroj: | Scientific Data, Vol 6, Iss 1, Pp 1-11 (2019) Scientific Data |
| ISSN: | 2052-4463 |
| Popis: | Golden pompano (Trachinotus ovatus), a marine fish in the Carangidae family, has a wide geographical distribution and adapts to severe environmental rigours. It is also an economically valuable aquaculture fish. To understand the genetic mechanism of adaption to environmental rigours and improve the production in aquaculture, we assembled its genome. By combination of Illumina and Pacbio reads, the obtained genome sequence is 647.5 Mb with the contig N50 of 1.80 Mb and the scaffold N50 of 5.05 Mb. The assembly covers 98.9% of the estimated genome size (655 Mb). Based on Hi-C data, 99.4% of the assembled bases are anchored into 24 pseudo-chromosomes. The annotation includes 21,915 protein-coding genes, in which 95.7% of 2,586 BUSCO vertebrate conserved genes are complete. This genome is expected to contribute to the comparative analysis of the Carangidae family. Measurement(s)DNA • chromosome conformation capture assay • transcription profiling assayTechnology Type(s)DNA sequencing • Hi-C • RNA sequencingFactor Type(s)organism partSample Characteristic - OrganismTrachinotus ovatusSample Characteristic - Environmentocean biome Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.9933515 |
| Databáze: | OpenAIRE |
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